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5 daysImprove error messages.Frederick Muriuki Muriithi
To help users better understand what the problem with their data is, the errors need to be clearer to them. This commit fixes some error messages.
5 daysFix bug with cascade of name checks.Frederick Muriuki Muriithi
The `meta["data_name"]` statement was leading to an exception in any case where the "data_name" key is not provided. This defeats the purpose of allowing either "dataname" or "data_name". This commit fixes that, while handling the case where neither one of the two are provided.
6 daysUpdate to error log, because it's an error, even though we return 0.Frederick Muriuki Muriithi
6 daysMove tracing details to INFO loglevel rather than debug.Frederick Muriuki Muriithi
We need to trace the auth process so as to help with debugging resource creation failures.
6 daysPull helper function out of main().Frederick Muriuki Muriithi
12 daysUse multiple threads to speed up the computations.Frederick Muriuki Muriithi
12 daysSpecify the --permu_output option to QTLReaperFrederick Muriuki Muriithi
Specify the --permu_output option to QTLReaper to prevent it from attempting to write to the working directory, which in the guix containers is a READONLY file system.
13 dayspylint: non-assigned expressions - silence linter.Frederick Muriuki Muriithi
13 daysPrompt user for a name for the resource object.Frederick Muriuki Muriithi
2026-03-25Add the DATASET-ID argument to command-line interfaces.Frederick Muriuki Muriithi
2026-03-11Check exit code of the Rust QTLReaper script.Frederick Muriuki Muriithi
2026-03-11Check whether files exist before attempting to operate on them.Frederick Muriuki Muriithi
2026-03-11Set "RUST_BACKTRACE" envvar if loglevel is DEBUG.Frederick Muriuki Muriithi
2026-02-06Fix bug: convert values to strings first.Frederick Muriuki Muriithi
2026-02-06Print out the correct error message.Frederick Muriuki Muriithi
2026-01-30Delete temporary file after completing deletion.Frederick Muriuki Muriithi
2026-01-30Add messages to script to indicate progress.Frederick Muriuki Muriithi
2026-01-30Fix bug in reading file: Ensure to read all lines.Frederick Muriuki Muriithi
2026-01-27Build script to delete phenotypes.Frederick Muriuki Muriithi
2026-01-13Migrate background job to use SQLite rather than Redis.Frederick Muriuki Muriithi
2025-12-19Fix issues caught by type-checker.Frederick Muriuki Muriithi
2025-12-17Fix linting problems.Frederick Muriuki Muriithi
2025-12-16Typo: Fix name of CLI variable.Frederick Muriuki Muriithi
2025-12-03Remove possible credentials leak.Frederick Muriuki Muriithi
2025-12-03Remove unnecessary comment.Frederick Muriuki Muriithi
2025-12-03Fix exitcode: Ensure correct exit code is returned.Frederick Muriuki Muriithi
2025-11-26scripts: Add script to run background QTLReaper process.Frederick Muriuki Muriithi
2025-11-19CLI: Add validator that checks path exists and is a directory.Frederick Muriuki Muriithi
2025-11-19Add function to setup logging for scripts.Frederick Muriuki Muriithi
2025-11-19Add utility functions for common CLI options/arguments.Frederick Muriuki Muriithi
2025-11-19Initialise package for CLI utilities.Frederick Muriuki Muriithi
2025-11-05Fix issues caught by linter.Frederick Muriuki Muriithi
2025-11-05Extract common CLI option to separate utility function.Frederick Muriuki Muriithi
2025-11-05Provide script to compute means for phenotypes.Frederick Muriuki Muriithi
2025-08-28Compute the means for the data.Frederick Muriuki Muriithi
2025-08-26Update script to use newer form of `create_new_phenotypes` function.Frederick Muriuki Muriithi
2025-07-14Handle case where authorisation is already set up.Frederick Muriuki Muriithi
2025-07-14Restore original names and instead ignore specific linter errors.Frederick Muriuki Muriithi
2025-07-14Fix linting issues.Frederick Muriuki Muriithi
2025-07-14Provide timeouts for requests calls.Frederick Muriuki Muriithi
2025-07-14Remove unused scriptFrederick Muriuki Muriithi
The bulk edit feature is no longer supported in the uploader.
2025-07-14Fix importsFrederick Muriuki Muriithi
Remove unused imports, update old imports to newer forms and add missing imports.
2025-07-02Compute the means while doing the cross-refences.Frederick Muriuki Muriithi
2025-07-01Ignore any optional files that are not provided.Frederick Muriuki Muriithi
2025-06-26Add cross-reference IDs to job as metadata.Frederick Muriuki Muriithi
2025-06-26BugFix: Logical bug - files have already been "untransposed".Frederick Muriuki Muriithi
The `read_csv_file_headers` function can read headings from non-transposed or transposed file, depending on the value of a flag. The bug was passing the value of the `*_transposed` flag from the control file, even after any transposed files have been "untransposed". This commit passes an explicit `False` value, and adds a comment to note the fix.
2025-06-26Convert to tuple to allow indexing.Frederick Muriuki Muriithi
2025-06-26Replace first field header with standard "id" header.Frederick Muriuki Muriithi
2025-06-26Pass in the field separator, and comment char while reading fileFrederick Muriuki Muriithi
Pass in the field separator character to split the fields correctly. Also pass in the comment character to safely ignore any comment lines.
2025-06-17Allow users to provide transposed files.Frederick Muriuki Muriithi
generated by cgit-pink 1.4.1 (git 2.36.1) at 2026-04-22 05:24:27 +0000