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AgeCommit message (Expand)Author
2024-12-03Fix some linting and mypy issues.Frederick Muriuki Muriithi
2024-12-03Improve error textFrederick Muriuki Muriithi
2024-12-03Update file metadata using a mappingFrederick Muriuki Muriithi
2024-12-03Provide consistent way to build file-specific fully-qualified keysFrederick Muriuki Muriithi
2024-12-03Save 'pheno' errors in redis as they are found.Frederick Muriuki Muriithi
2024-12-03Add some phenocovar metadata.Frederick Muriuki Muriithi
2024-12-03Save phenocovar errors in redis as they are found.Frederick Muriuki Muriithi
2024-12-03Pass the redis connection and fully qualified job idFrederick Muriuki Muriithi
2024-12-03Wrap everything in try-catch to handle errors gracefully.Frederick Muriuki Muriithi
2024-12-02Fix typo.Frederick Muriuki Muriithi
2024-12-02Send logs to STDOUT too.Frederick Muriuki Muriithi
2024-12-02Return 0 on completion of QC processing.Frederick Muriuki Muriithi
2024-12-02Change from 'pending' to 'started' on entry to script.Frederick Muriuki Muriithi
2024-11-22Use gn-libs code for db connection.Frederick Muriuki Muriithi
2024-10-24Reduce number of local variables created in function.Frederick Muriuki Muriithi
2024-10-24Add `jobid` to extraction directoryFrederick Muriuki Muriithi
2024-10-24Check pheno, phenose, and phenonum files with loggingFrederick Muriuki Muriithi
2024-10-24Check phenocovar files with loggingFrederick Muriuki Muriithi
2024-10-24Fix linting and typing errors.Frederick Muriuki Muriithi
2024-10-24Add a `--loglevel` argument to select loglevel in scriptsFrederick Muriuki Muriithi
2024-10-24Parse entire namespace object rather than individual values.Frederick Muriuki Muriithi
2024-10-24Move logger creation to `build_main` functionFrederick Muriuki Muriithi
2024-10-24Add handler to send log messages to specific Redis listFrederick Muriuki Muriithi
2024-10-22Refactor `qc_pheno_file` and reuse it for different file types.Frederick Muriuki Muriithi
2024-10-22Check for errors in `pheno` files.Frederick Muriuki Muriithi
2024-10-21Check `phenocovar` files for errors.Frederick Muriuki Muriithi
2024-10-17Cleanup: Delete all extracted files after processing.Frederick Muriuki Muriithi
2024-10-17Leave TODO notes for what needs to be done.Frederick Muriuki Muriithi
2024-10-17Fetch samples from databaseFrederick Muriuki Muriithi
2024-10-17Undo transpose for any transposed filesFrederick Muriuki Muriithi
2024-10-17Pass new arguments to QC function.Frederick Muriuki Muriithi
2024-10-17Add `speciesid` and `populationid` arguments to the script.Frederick Muriuki Muriithi
2024-10-17Add the working directory argument to the script.Frederick Muriuki Muriithi
2024-10-17Extract the R/qtl2 bundle for processing.Frederick Muriuki Muriithi
2024-10-17Extract common functions.Frederick Muriuki Muriithi
2024-10-17Save errors for each file in lists. Parallelise error checking.Frederick Muriuki Muriithi
2024-10-17Rewrite the QC code for R/qtl2Frederick Muriuki Muriithi
2024-10-14Initialise background script for running QC on phenotype bundles.Frederick Muriuki Muriithi
2024-10-14BugFix: Use provided prefixFrederick Muriuki Muriithi
2024-10-14Make addition of arguments independent of each other.Frederick Muriuki Muriithi
2024-09-09Enable samples uploads.Frederick Muriuki Muriithi
2024-09-03Initialise the populations package and update references.Frederick Muriuki Muriithi
2024-08-28Move code handling expression data upload into new module.Frederick Muriuki Muriithi
2024-08-16Log out correct parameters.Frederick Muriuki Muriithi
2024-08-13Bug: cross reference with NULL cM when "gmap" file is absentFrederick Muriuki Muriithi
2024-08-12Rename module: Module contains exceptions classes.Frederick Muriuki Muriithi
2024-08-08Fix bugs and pass in logger to functions.Frederick Muriuki Muriithi
2024-08-06Pass logger on to inner functionsFrederick Muriuki Muriithi
2024-07-25Fix typing and linting errors.Frederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-22 13:55:18 +0000