Compute request data for …/data/link/phenotypes endpoint.

1 files changed, 16 insertions, 3 deletions

diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py
index 116605f..2b024c1 100644
--- a/scripts/load_phenotypes_to_db.py
+++ b/scripts/load_phenotypes_to_db.py
@@ -258,14 +258,27 @@ def update_auth(authserver, token, species, population, dataset, xrefdata):
             headers=headers
         )
 
-    def __link_data__(user, group):
+    def __link_data__(user):
         logger.debug("… linking uploaded data to user's group")
         return mrequests.post(
             authserveruri("/auth/data/link/phenotype"),
             headers=headers,
-            data={
+            json={
+                "species_name": species["Name"],
                 "group_id": user["group"]["group_id"],
-                "traits": []# TODO: process these here
+                "selected": [
+                    {
+                        "SpeciesId": species["SpeciesId"],
+                        "InbredSetId": population["Id"],
+                        "PublishFreezeId": dataset["Id"],
+                        "dataset_name": dataset["Name"],
+                        "dataset_fullname": dataset["FullName"],
+                        "dataset_shortname": dataset["ShortName"],
+                        "PublishXRefId": item["xref_id"]
+                    }
+                    for item in xrefdata
+                ],
+                "using-raw-ids": "on"
             }).then(lambda ld_results: (user, ld_results))
 
     def __fetch_phenotype_category_details__(user, linkeddata):