| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 10 days | Type-Checking: Add type hints for variable. HEAD main | Frederick Muriuki Muriithi | |
| 10 days | Lint: Disable some checks for specific functions. | Frederick Muriuki Muriithi | |
| 10 days | Lint: Add docstrings for functions. | Frederick Muriuki Muriithi | |
| 10 days | Make dataset name not editable. | Frederick Muriuki Muriithi | |
| 10 days | Provide a default name for the dataset. | Frederick Muriuki Muriithi | |
| 10 days | Improve tooltip message. | Frederick Muriuki Muriithi | |
| 10 days | Remove link to provide more area for publication selection. | Frederick Muriuki Muriithi | |
| Remove the link from the publication title to allow it be more easily used for selecting the publication on the "Upload Phenotypes" page. The user has other ways for getting to a publication to edit it. | |||
| 2026-02-11 | Optionally render breadcrumb if no dataset defined yet. | Frederick Muriuki Muriithi | |
| 2026-02-10 | Pass any set feature flags back to ourselves after authentication. | Frederick Muriuki Muriithi | |
| 2026-02-10 | Make function usable outside module. | Frederick Muriuki Muriithi | |
| 2026-02-10 | Samples: Redirect background job correctly on success. | Frederick Muriuki Muriithi | |
| 2026-02-09 | Update configuration variable name. | Frederick Muriuki Muriithi | |
| 2026-02-06 | Fix bug: convert values to strings first. | Frederick Muriuki Muriithi | |
| 2026-02-06 | Expose 'delete-phenotypes' feature to end users. | Frederick Muriuki Muriithi | |
| 2026-02-06 | Fix flash message class. | Frederick Muriuki Muriithi | |
| 2026-02-06 | Print out the correct error message. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Fetch and display actual details for phenotypes being deleted. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Narrow selection if cross-reference IDs are provided. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Set max-width to prevent <pre> from reflowing the page. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Implement UI logic to trigger phenotype deletion job. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Delete temporary file after completing deletion. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Add messages to script to indicate progress. | Frederick Muriuki Muriithi | |
| 2026-01-30 | Fix bug in reading file: Ensure to read all lines. | Frederick Muriuki Muriithi | |
| 2026-01-29 | Fix indentation. | Frederick Muriuki Muriithi | |
| 2026-01-29 | Improve layout on small screens. | Frederick Muriuki Muriithi | |
| 2026-01-29 | Trim whitespace in class names. | Frederick Muriuki Muriithi | |
| 2026-01-29 | SHIM: Simplify preview UI. Hard-code container width. | Frederick Muriuki Muriithi | |
| This hard-codes the width of the table's container element to ensure that the overflow property is respected. Without the hard-coded width, the table - generated with javascript - overrides the page width, causing all content to reflow. We do not want that. This also get's rid of the unnecessary "card" interface. | |||
| 2026-01-29 | Make the "no value" indicator more explicit. | Frederick Muriuki Muriithi | |
| 2026-01-29 | Remove fieldsets: They break styling. | Frederick Muriuki Muriithi | |
| 2026-01-28 | Reapply "Channel - guix-bioinformatics: Upgrade to commit 9b0955f." | Frederick Muriuki Muriithi | |
| This reverts commit 3dff71cfcb5beebe5c74c05f47e39faa8e18adef. | |||
| 2026-01-28 | Channels: Fix commits of upstream channels to prevent build failures | Frederick Muriuki Muriithi | |
| * guix-past: Fix to commit 473c942. * guix-rust-past-crates: Fix to commit b8b7ffb. | |||
| 2026-01-28 | Revert "Channel - guix-bioinformatics: Upgrade to commit 9b0955f." | Frederick Muriuki Muriithi | |
| The guix-bioinformatics commit 9b0955f leads to a cascade of breakages. I am thus reverting this commit to restore a previous sane state. This reverts commit 7a9108af8d5ad07c1593b256dc3e1a6a7243ad70. | |||
| 2026-01-28 | Channel - guix-bioinformatics: Upgrade to commit 9b0955f. | Frederick Muriuki Muriithi | |
| Update the commit for the guix bioinformatics channel to fit in with @mbonz update at https://git.genenetwork.org/gn-machines/commit/?id=04c2a18f615bc0a387235544433989af2e8cb62b | |||
| 2026-01-27 | Build script to delete phenotypes. | Frederick Muriuki Muriithi | |
| 2026-01-27 | Fix typos in configuration variable name. | Frederick Muriuki Muriithi | |
| 2026-01-27 | Handle big deletes: Delete in batches. | Frederick Muriuki Muriithi | |
| Do avoid locking up the database server, or leading to sluggishness when doing huge deletes, do the deletions in chunks, with a tiny delay between each delete to free up the server.a See https://mariadb.com/docs/server/ha-and-performance/optimization-and-tuning/query-optimizations/big-deletes | |||
| 2026-01-26 | Provide some utilities to fetch common config variables. | Frederick Muriuki Muriithi | |
| 2026-01-26 | Move the UPLOAD_DIRECTORY under the SCRATCH_DIRECTORY by default. | Frederick Muriuki Muriithi | |
| If the UPLOAD_DIRECTORY is not specified in the configuration file(s), then, by default, have it under the SCRATCH_DIRECTORY. | |||
| 2026-01-26 | Replace TEMPORARY_DIRECTORY with SCRATCH_DIRECTORY | Frederick Muriuki Muriithi | |
| Avoid using the terminology "TEMPORARY_DIRECTORY" which encourages use of the shared global mutable state in /tmp, that we want to move away from. Instead, we use "SCRATCH_DIRECTORY" which is an explicit specified directory for state needed for and by the gn-uploader application. | |||
| 2026-01-26 | Outline deletion: Create scaffolding for idea. | Frederick Muriuki Muriithi | |
| 2026-01-26 | Initialise forms to help delete phenotypes. | Frederick Muriuki Muriithi | |
| 2026-01-26 | Remove commented out proof-of-concept code. | Frederick Muriuki Muriithi | |
| 2026-01-26 | Bug: DataTables: Check both radio buttons and checkboxes. | Frederick Muriuki Muriithi | |
| Extract logic for checking/unchecking a datatable's row's checkbox or radio button as relevant, into a new function. Use new function instead of multiple copies of the logic. | |||
| 2026-01-23 | Remove unnecessary console.debug() statement. | Frederick Muriuki Muriithi | |
| 2026-01-23 | Fix some minor styling (css) issues. | Frederick Muriuki Muriithi | |
| 2026-01-23 | Add initial placeholder UI to confirm deletion. | Frederick Muriuki Muriithi | |
| 2026-01-23 | DataTables: Add some custom utility functions. | Frederick Muriuki Muriithi | |
| 2026-01-23 | DataTables: Improve drawCallback | Frederick Muriuki Muriithi | |
| * Use references from the datatables API rather than depending on specific classes existing in the tables. | |||
| 2026-01-23 | DataTables: Bug -- Improve performance - use provided indexes. | Frederick Muriuki Muriithi | |
| * Fix the function signatures * Use the provided indexes for selection | |||
| 2026-01-23 | DataTables: Bug -- Only add the data length if necessary. | Frederick Muriuki Muriithi | |
 |
index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
| about summary refs log tree commit diff |