gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
3 days	Move button to the right. HEAD main	Frederick Muriuki Muriithi

3 days	Improve alignment of table column headings.	Frederick Muriuki Muriithi

3 days	Replace '#' with 'Index' in tables.	Frederick Muriuki Muriithi

3 days	Species: Improve UI text, and fix minor bug.	Frederick Muriuki Muriithi

3 days	Publication: Update UI Text.	Frederick Muriuki Muriithi
	Update the UI text for the Publications page to the text provided by @acenteno.
3 days	Change frontpage text	Frederick Muriuki Muriithi
	Update the text to the suggestion made by @acenteno. Move the sign-in button to the right.
3 days	Fix indentation: Everything is re-indented; no other changes.	Frederick Muriuki Muriithi

3 days	Add a frontpage banner image.	Frederick Muriuki Muriithi

9 days	Check exit code of the Rust QTLReaper script.	Frederick Muriuki Muriithi

9 days	Check whether files exist before attempting to operate on them.	Frederick Muriuki Muriithi

9 days	Set "RUST_BACKTRACE" envvar if loglevel is DEBUG.	Frederick Muriuki Muriithi

11 days	Enable download of list of errors.	Frederick Muriuki Muriithi

2026-02-18	Type-Checking: Add type hints for variable.	Frederick Muriuki Muriithi

2026-02-18	Lint: Disable some checks for specific functions.	Frederick Muriuki Muriithi

2026-02-18	Lint: Add docstrings for functions.	Frederick Muriuki Muriithi

2026-02-18	Make dataset name not editable.	Frederick Muriuki Muriithi

2026-02-18	Provide a default name for the dataset.	Frederick Muriuki Muriithi

2026-02-18	Improve tooltip message.	Frederick Muriuki Muriithi

2026-02-18	Remove link to provide more area for publication selection.	Frederick Muriuki Muriithi
	Remove the link from the publication title to allow it be more easily used for selecting the publication on the "Upload Phenotypes" page. The user has other ways for getting to a publication to edit it.
2026-02-11	Optionally render breadcrumb if no dataset defined yet.	Frederick Muriuki Muriithi

2026-02-10	Pass any set feature flags back to ourselves after authentication.	Frederick Muriuki Muriithi

2026-02-10	Make function usable outside module.	Frederick Muriuki Muriithi

2026-02-10	Samples: Redirect background job correctly on success.	Frederick Muriuki Muriithi

2026-02-09	Update configuration variable name.	Frederick Muriuki Muriithi

2026-02-06	Fix bug: convert values to strings first.	Frederick Muriuki Muriithi

2026-02-06	Expose 'delete-phenotypes' feature to end users.	Frederick Muriuki Muriithi

2026-02-06	Fix flash message class.	Frederick Muriuki Muriithi

2026-02-06	Print out the correct error message.	Frederick Muriuki Muriithi

2026-01-30	Fetch and display actual details for phenotypes being deleted.	Frederick Muriuki Muriithi

2026-01-30	Narrow selection if cross-reference IDs are provided.	Frederick Muriuki Muriithi

2026-01-30	Set max-width to prevent <pre> from reflowing the page.	Frederick Muriuki Muriithi

2026-01-30	Implement UI logic to trigger phenotype deletion job.	Frederick Muriuki Muriithi

2026-01-30	Delete temporary file after completing deletion.	Frederick Muriuki Muriithi

2026-01-30	Add messages to script to indicate progress.	Frederick Muriuki Muriithi

2026-01-30	Fix bug in reading file: Ensure to read all lines.	Frederick Muriuki Muriithi

2026-01-29	Fix indentation.	Frederick Muriuki Muriithi

2026-01-29	Improve layout on small screens.	Frederick Muriuki Muriithi

2026-01-29	Trim whitespace in class names.	Frederick Muriuki Muriithi

2026-01-29	SHIM: Simplify preview UI. Hard-code container width.	Frederick Muriuki Muriithi
	This hard-codes the width of the table's container element to ensure that the overflow property is respected. Without the hard-coded width, the table - generated with javascript - overrides the page width, causing all content to reflow. We do not want that. This also get's rid of the unnecessary "card" interface.
2026-01-29	Make the "no value" indicator more explicit.	Frederick Muriuki Muriithi

2026-01-29	Remove fieldsets: They break styling.	Frederick Muriuki Muriithi

2026-01-28	Reapply "Channel - guix-bioinformatics: Upgrade to commit 9b0955f."	Frederick Muriuki Muriithi
	This reverts commit 3dff71cfcb5beebe5c74c05f47e39faa8e18adef.
2026-01-28	Channels: Fix commits of upstream channels to prevent build failures	Frederick Muriuki Muriithi
	* guix-past: Fix to commit 473c942. * guix-rust-past-crates: Fix to commit b8b7ffb.
2026-01-28	Revert "Channel - guix-bioinformatics: Upgrade to commit 9b0955f."	Frederick Muriuki Muriithi
	The guix-bioinformatics commit 9b0955f leads to a cascade of breakages. I am thus reverting this commit to restore a previous sane state. This reverts commit 7a9108af8d5ad07c1593b256dc3e1a6a7243ad70.
2026-01-28	Channel - guix-bioinformatics: Upgrade to commit 9b0955f.	Frederick Muriuki Muriithi
	Update the commit for the guix bioinformatics channel to fit in with @mbonz update at https://git.genenetwork.org/gn-machines/commit/?id=04c2a18f615bc0a387235544433989af2e8cb62b
2026-01-27	Build script to delete phenotypes.	Frederick Muriuki Muriithi

2026-01-27	Fix typos in configuration variable name.	Frederick Muriuki Muriithi

2026-01-27	Handle big deletes: Delete in batches.	Frederick Muriuki Muriithi
	Do avoid locking up the database server, or leading to sluggishness when doing huge deletes, do the deletions in chunks, with a tiny delay between each delete to free up the server.a See https://mariadb.com/docs/server/ha-and-performance/optimization-and-tuning/query-optimizations/big-deletes
2026-01-26	Provide some utilities to fetch common config variables.	Frederick Muriuki Muriithi

2026-01-26	Move the UPLOAD_DIRECTORY under the SCRATCH_DIRECTORY by default.	Frederick Muriuki Muriithi
	If the UPLOAD_DIRECTORY is not specified in the configuration file(s), then, by default, have it under the SCRATCH_DIRECTORY.