index
NameDescriptionIdle
gn-transform-databasesData transformers for GeneNetwork (particularly to RDF) 6 weeks
pangemmaPanGEMMA: Genome-wide Efficient Mixed Model Association 7 weeks
genecupDeep learning method for linking pubmed with custom ontology 8 weeks
guix-bioinformaticsBioinformatics packages for GNU Guix2 months
ai-toolsai-tools: Definitions for tools we use with LLM/AI systems. 2 months
guix-north-americaGuix machine for the North America build 'farm' 3 months
gn-docsPublic documentation files that can be edited from GN 4 months
gn-shepherd-servicesGeneNetwork web services - R-shiny etc. 13 months
ccwlConcise Common Workflow Language (mirror of https://github.com/arunisaac/ccwl) 14 months
guile-xapianGuile bindings for Xapian 14 months
guile-emailGuile email parser 14 months
ravananHigh-reproducibility CWL runner powered by Guix 14 months
guix-forgeGuix software forge meta-service 14 months
tissueText based project information management system 14 months
gn-aiA repository for GeneNetwork's AI tool development 14 months
gn-machinesGuix configuration for genenetwork machines 2 years
gn-uploadergn-uploader: Data uploader for GeneNetwork 2 years
gn-guileGNU Guile API and web service support for GeneNetwork 3 years
gn-authGN authentication and authorization service 3 years
genenetwork2GeneNetwork (2nd generation) 3 years
genenetwork3GeneNetwork3 REST API for data science and machine learning 3 years
gn-gemtextGeneNetwork gemtext knowledge base and issue tracker (mirror right now)
gn-integration-testsIntegration (and hopefully, end-to-end) tests for GeneNetwork services.
gn-libsUnnamed repository; edit this file 'description' to name the repository.
guix-bioinformatics-pastUnnamed repository; edit this file 'description' to name the repository.
mouse-longevity-appR/shiny app shows longevity data in GeneNetwork
presentationsThis repository tracks code for our public presentations and talks