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gn-uploader: Data uploader for GeneNetwork
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Author
2025-06-10
Change message level.
Frederick Muriuki Muriithi
2025-06-09
Fix minor bug.
Frederick Muriuki Muriithi
2025-06-09
Run the authorisation update requests.
Frederick Muriuki Muriithi
2025-06-09
Compute the data_link_ids from the request results.
Frederick Muriuki Muriithi
2025-06-09
Fix bug in data for creating a new resource.
Frederick Muriuki Muriithi
2025-06-09
Compute request data for …/data/link/phenotypes endpoint.
Frederick Muriuki Muriithi
2025-06-09
Add debug logging to track process.
Frederick Muriuki Muriithi
2025-06-09
Fix return: Don't use `RETURNING *`.
Frederick Muriuki Muriithi
2025-06-05
Break up long lines.
Frederick Muriuki Muriithi
2025-06-05
`update_auth()` scaffolding
Frederick Muriuki Muriithi
2025-06-05
Only update authorisation after all data is entered.
Frederick Muriuki Muriithi
2025-06-03
Add more logging to track progress.
Frederick Muriuki Muriithi
2025-06-03
Save data with `LOAD DATA INFILE …` query
Frederick Muriuki Muriithi
2025-06-03
Extract building of data items into helper function.
Frederick Muriuki Muriithi
2025-06-03
Memory saving: Don't reload saved data
Frederick Muriuki Muriithi
2025-06-02
Compute data in files lazily.
Frederick Muriuki Muriithi
2025-06-02
Process NA-strings in the worker script.
Frederick Muriuki Muriithi
2025-06-02
Update placeholder function
Frederick Muriuki Muriithi
2025-06-02
Add missing import.
Frederick Muriuki Muriithi
2025-06-02
Fix bug: Compute data correctly. Replace N/A strings with NoneType.
Frederick Muriuki Muriithi
2025-06-02
Add some debugging statements.
Frederick Muriuki Muriithi
2025-06-02
Pass the phenotypes name-to-id map to functions.
Frederick Muriuki Muriithi
2025-06-02
Compute the map from a phenotype's name to its ID.
Frederick Muriuki Muriithi
2025-05-30
Refactor: Extract common pattern into separate function
Frederick Muriuki Muriithi
2025-05-30
Add typing to load_data function and invoke it.
Frederick Muriuki Muriithi
2025-05-30
Save standard errors and counts.
Frederick Muriuki Muriithi
2025-05-30
Get the species, population and dataset.
Frederick Muriuki Muriithi
2025-05-30
Add more tables to lock list.
Frederick Muriuki Muriithi
2025-05-30
Fix query: Add missing field and parameter.
Frederick Muriuki Muriithi
2025-05-30
Fix function names.
Frederick Muriuki Muriithi
2025-05-30
Fix processing of numerical data to save to the database.
Frederick Muriuki Muriithi
2025-05-30
Fix file paths: append the path to the extraction directory.
Frederick Muriuki Muriithi
2025-05-30
Refactor out common `__row_to_dataitems__` function.
Frederick Muriuki Muriithi
2025-05-28
Bug: Fix actual data value, not result set.
Frederick Muriuki Muriithi
2025-05-28
Bug: Add missing commas.
Frederick Muriuki Muriithi
2025-05-28
Maintain single list of tables — build logs and query from list
Frederick Muriuki Muriithi
2025-05-28
Add missing import.
Frederick Muriuki Muriithi
2025-05-28
Pass path to bundle extraction dir, and make paths relative to it.
Frederick Muriuki Muriithi
2025-05-19
Extract the bundle first.
Frederick Muriuki Muriithi
2025-05-19
Add "Publication" table to locked tables.
Frederick Muriuki Muriithi
2025-05-19
Bug: Connection objects do not have execute() function.
Frederick Muriuki Muriithi
2025-05-19
Fix generic bugs
Frederick Muriuki Muriithi
2025-05-19
Import missing symbols.
Frederick Muriuki Muriithi
2025-05-19
Cross-reference phenotypes, publications, and data.
Frederick Muriuki Muriithi
2025-05-19
Retrieve publication first.
Frederick Muriuki Muriithi
2025-05-19
Simplify handling of publications: Assume a maximum of one.
Frederick Muriuki Muriithi
2025-05-19
Add placeholder stub to be implemented later.
Frederick Muriuki Muriithi
2025-05-19
Add some notes for later.
Frederick Muriuki Muriithi
2025-05-19
Save numeric/computational data for phenotypes.
Frederick Muriuki Muriithi
2025-05-19
Retrieve samples' details from the database.
Frederick Muriuki Muriithi
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