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rework-species-selection
gn-uploader: Data uploader for GeneNetwork
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2025-07-14
Handle case where authorisation is already set up.
Frederick Muriuki Muriithi
2025-07-14
Restore original names and instead ignore specific linter errors.
Frederick Muriuki Muriithi
2025-07-14
Fix linting issues.
Frederick Muriuki Muriithi
2025-07-14
Provide timeouts for requests calls.
Frederick Muriuki Muriithi
2025-07-14
Remove unused script
Frederick Muriuki Muriithi
2025-07-14
Fix imports
Frederick Muriuki Muriithi
2025-07-02
Compute the means while doing the cross-refences.
Frederick Muriuki Muriithi
2025-07-01
Ignore any optional files that are not provided.
Frederick Muriuki Muriithi
2025-06-26
Add cross-reference IDs to job as metadata.
Frederick Muriuki Muriithi
2025-06-26
BugFix: Logical bug - files have already been "untransposed".
Frederick Muriuki Muriithi
2025-06-26
Convert to tuple to allow indexing.
Frederick Muriuki Muriithi
2025-06-26
Replace first field header with standard "id" header.
Frederick Muriuki Muriithi
2025-06-26
Pass in the field separator, and comment char while reading file
Frederick Muriuki Muriithi
2025-06-17
Allow users to provide transposed files.
Frederick Muriuki Muriithi
2025-06-10
Pass on the publication to the next job.
Frederick Muriuki Muriithi
2025-06-10
Change message level.
Frederick Muriuki Muriithi
2025-06-09
Fix minor bug.
Frederick Muriuki Muriithi
2025-06-09
Run the authorisation update requests.
Frederick Muriuki Muriithi
2025-06-09
Compute the data_link_ids from the request results.
Frederick Muriuki Muriithi
2025-06-09
Fix bug in data for creating a new resource.
Frederick Muriuki Muriithi
2025-06-09
Compute request data for …/data/link/phenotypes endpoint.
Frederick Muriuki Muriithi
2025-06-09
Add debug logging to track process.
Frederick Muriuki Muriithi
2025-06-09
Fix return: Don't use `RETURNING *`.
Frederick Muriuki Muriithi
2025-06-05
Break up long lines.
Frederick Muriuki Muriithi
2025-06-05
`update_auth()` scaffolding
Frederick Muriuki Muriithi
2025-06-05
Only update authorisation after all data is entered.
Frederick Muriuki Muriithi
2025-06-03
Add more logging to track progress.
Frederick Muriuki Muriithi
2025-06-03
Save data with `LOAD DATA INFILE …` query
Frederick Muriuki Muriithi
2025-06-03
Extract building of data items into helper function.
Frederick Muriuki Muriithi
2025-06-03
Memory saving: Don't reload saved data
Frederick Muriuki Muriithi
2025-06-02
Compute data in files lazily.
Frederick Muriuki Muriithi
2025-06-02
Process NA-strings in the worker script.
Frederick Muriuki Muriithi
2025-06-02
Update placeholder function
Frederick Muriuki Muriithi
2025-06-02
Add missing import.
Frederick Muriuki Muriithi
2025-06-02
Fix bug: Compute data correctly. Replace N/A strings with NoneType.
Frederick Muriuki Muriithi
2025-06-02
Add some debugging statements.
Frederick Muriuki Muriithi
2025-06-02
Pass the phenotypes name-to-id map to functions.
Frederick Muriuki Muriithi
2025-06-02
Compute the map from a phenotype's name to its ID.
Frederick Muriuki Muriithi
2025-05-30
Refactor: Extract common pattern into separate function
Frederick Muriuki Muriithi
2025-05-30
Add typing to load_data function and invoke it.
Frederick Muriuki Muriithi
2025-05-30
Save standard errors and counts.
Frederick Muriuki Muriithi
2025-05-30
Get the species, population and dataset.
Frederick Muriuki Muriithi
2025-05-30
Add more tables to lock list.
Frederick Muriuki Muriithi
2025-05-30
Fix query: Add missing field and parameter.
Frederick Muriuki Muriithi
2025-05-30
Fix function names.
Frederick Muriuki Muriithi
2025-05-30
Fix processing of numerical data to save to the database.
Frederick Muriuki Muriithi
2025-05-30
Fix file paths: append the path to the extraction directory.
Frederick Muriuki Muriithi
2025-05-30
Refactor out common `__row_to_dataitems__` function.
Frederick Muriuki Muriithi
2025-05-28
Bug: Fix actual data value, not result set.
Frederick Muriuki Muriithi
2025-05-28
Bug: Add missing commas.
Frederick Muriuki Muriithi
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