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gn-uploader: Data uploader for GeneNetwork
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Author
3 days
Fix bug: convert values to strings first.
HEAD
main
Frederick Muriuki Muriithi
3 days
Print out the correct error message.
Frederick Muriuki Muriithi
10 days
Delete temporary file after completing deletion.
Frederick Muriuki Muriithi
10 days
Add messages to script to indicate progress.
Frederick Muriuki Muriithi
10 days
Fix bug in reading file: Ensure to read all lines.
Frederick Muriuki Muriithi
13 days
Build script to delete phenotypes.
Frederick Muriuki Muriithi
2026-01-13
Migrate background job to use SQLite rather than Redis.
Frederick Muriuki Muriithi
2025-12-19
Fix issues caught by type-checker.
Frederick Muriuki Muriithi
2025-12-17
Fix linting problems.
Frederick Muriuki Muriithi
2025-12-16
Typo: Fix name of CLI variable.
Frederick Muriuki Muriithi
2025-12-03
Remove possible credentials leak.
Frederick Muriuki Muriithi
2025-12-03
Remove unnecessary comment.
Frederick Muriuki Muriithi
2025-12-03
Fix exitcode: Ensure correct exit code is returned.
Frederick Muriuki Muriithi
2025-11-26
scripts: Add script to run background QTLReaper process.
Frederick Muriuki Muriithi
2025-11-19
CLI: Add validator that checks path exists and is a directory.
Frederick Muriuki Muriithi
2025-11-19
Add function to setup logging for scripts.
Frederick Muriuki Muriithi
2025-11-19
Add utility functions for common CLI options/arguments.
Frederick Muriuki Muriithi
2025-11-19
Initialise package for CLI utilities.
Frederick Muriuki Muriithi
2025-11-05
Fix issues caught by linter.
Frederick Muriuki Muriithi
2025-11-05
Extract common CLI option to separate utility function.
Frederick Muriuki Muriithi
2025-11-05
Provide script to compute means for phenotypes.
Frederick Muriuki Muriithi
2025-08-28
Compute the means for the data.
Frederick Muriuki Muriithi
2025-08-26
Update script to use newer form of `create_new_phenotypes` function.
Frederick Muriuki Muriithi
2025-07-14
Handle case where authorisation is already set up.
Frederick Muriuki Muriithi
2025-07-14
Restore original names and instead ignore specific linter errors.
Frederick Muriuki Muriithi
2025-07-14
Fix linting issues.
Frederick Muriuki Muriithi
2025-07-14
Provide timeouts for requests calls.
Frederick Muriuki Muriithi
2025-07-14
Remove unused script
Frederick Muriuki Muriithi
2025-07-14
Fix imports
Frederick Muriuki Muriithi
2025-07-02
Compute the means while doing the cross-refences.
Frederick Muriuki Muriithi
2025-07-01
Ignore any optional files that are not provided.
Frederick Muriuki Muriithi
2025-06-26
Add cross-reference IDs to job as metadata.
Frederick Muriuki Muriithi
2025-06-26
BugFix: Logical bug - files have already been "untransposed".
Frederick Muriuki Muriithi
2025-06-26
Convert to tuple to allow indexing.
Frederick Muriuki Muriithi
2025-06-26
Replace first field header with standard "id" header.
Frederick Muriuki Muriithi
2025-06-26
Pass in the field separator, and comment char while reading file
Frederick Muriuki Muriithi
2025-06-17
Allow users to provide transposed files.
Frederick Muriuki Muriithi
2025-06-10
Pass on the publication to the next job.
Frederick Muriuki Muriithi
2025-06-10
Change message level.
Frederick Muriuki Muriithi
2025-06-09
Fix minor bug.
Frederick Muriuki Muriithi
2025-06-09
Run the authorisation update requests.
Frederick Muriuki Muriithi
2025-06-09
Compute the data_link_ids from the request results.
Frederick Muriuki Muriithi
2025-06-09
Fix bug in data for creating a new resource.
Frederick Muriuki Muriithi
2025-06-09
Compute request data for …/data/link/phenotypes endpoint.
Frederick Muriuki Muriithi
2025-06-09
Add debug logging to track process.
Frederick Muriuki Muriithi
2025-06-09
Fix return: Don't use `RETURNING *`.
Frederick Muriuki Muriithi
2025-06-05
Break up long lines.
Frederick Muriuki Muriithi
2025-06-05
`update_auth()` scaffolding
Frederick Muriuki Muriithi
2025-06-05
Only update authorisation after all data is entered.
Frederick Muriuki Muriithi
2025-06-03
Add more logging to track progress.
Frederick Muriuki Muriithi
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