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author | Frederick Muriuki Muriithi | 2024-10-17 14:34:58 -0500 |
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committer | Frederick Muriuki Muriithi | 2024-10-17 14:39:43 -0500 |
commit | 13024b6bd1e7a84abc0d6b7b4aafadff75064168 (patch) | |
tree | cf807fd737a87b63e5c415937c458f08e13c809f /scripts | |
parent | 5b33832cbb6a7eb40cd87128efc3bcf2b5a54726 (diff) | |
download | gn-uploader-13024b6bd1e7a84abc0d6b7b4aafadff75064168.tar.gz |
Leave TODO notes for what needs to be done.
Diffstat (limited to 'scripts')
-rw-r--r-- | scripts/rqtl2/phenotypes_qc.py | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py index d565be2..b2b02ed 100644 --- a/scripts/rqtl2/phenotypes_qc.py +++ b/scripts/rqtl2/phenotypes_qc.py @@ -158,8 +158,15 @@ def run_qc(# pylint: disable=[too-many-arguments] # - Check that `description` and `units` is present in phenocovar for # all phenotypes + # qc_phenocovar_files(…) + + # - Check all samples in pheno files exist in database # - Check all phenotypes in pheno files exist in phenocovar files - # - Check all numeric values + # - Check all numeric values in pheno files + # qc_pheno_files(…) + # - Check the 3 checks above for phenose and phenonum values too + # qc_phenose_files(…) + # qc_phenonum_files(…) raise NotImplementedError("WIP!") |