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authorFrederick Muriuki Muriithi2024-10-17 14:34:58 -0500
committerFrederick Muriuki Muriithi2024-10-17 14:39:43 -0500
commit13024b6bd1e7a84abc0d6b7b4aafadff75064168 (patch)
treecf807fd737a87b63e5c415937c458f08e13c809f
parent5b33832cbb6a7eb40cd87128efc3bcf2b5a54726 (diff)
downloadgn-uploader-13024b6bd1e7a84abc0d6b7b4aafadff75064168.tar.gz
Leave TODO notes for what needs to be done.
-rw-r--r--scripts/rqtl2/phenotypes_qc.py9
1 files changed, 8 insertions, 1 deletions
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py
index d565be2..b2b02ed 100644
--- a/scripts/rqtl2/phenotypes_qc.py
+++ b/scripts/rqtl2/phenotypes_qc.py
@@ -158,8 +158,15 @@ def run_qc(# pylint: disable=[too-many-arguments]
# - Check that `description` and `units` is present in phenocovar for
# all phenotypes
+ # qc_phenocovar_files(…)
+
+ # - Check all samples in pheno files exist in database
# - Check all phenotypes in pheno files exist in phenocovar files
- # - Check all numeric values
+ # - Check all numeric values in pheno files
+ # qc_pheno_files(…)
+ # - Check the 3 checks above for phenose and phenonum values too
+ # qc_phenose_files(…)
+ # qc_phenonum_files(…)
raise NotImplementedError("WIP!")