diff options
Diffstat (limited to 'scripts/rqtl2/phenotypes_qc.py')
| -rw-r--r-- | scripts/rqtl2/phenotypes_qc.py | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py index d565be2..b2b02ed 100644 --- a/scripts/rqtl2/phenotypes_qc.py +++ b/scripts/rqtl2/phenotypes_qc.py @@ -158,8 +158,15 @@ def run_qc(# pylint: disable=[too-many-arguments] # - Check that `description` and `units` is present in phenocovar for # all phenotypes + # qc_phenocovar_files(…) + + # - Check all samples in pheno files exist in database # - Check all phenotypes in pheno files exist in phenocovar files - # - Check all numeric values + # - Check all numeric values in pheno files + # qc_pheno_files(…) + # - Check the 3 checks above for phenose and phenonum values too + # qc_phenose_files(…) + # qc_phenonum_files(…) raise NotImplementedError("WIP!") |