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2018-08-25Added remarksPjotr Prins
2018-08-25segfpe handlingPjotr Prins
2018-08-25eigenvalues: some error checking addedPjotr Prins
2018-07-27Add floating point hardware checking for Intel on GNU compilersPjotr Prins
When using the -check function (the default) it is enabled for Kinship computation and LM/LMM up to individual SNP computation. This means there can no longer be NaN values for matrices that are reused for every SNP, but it is possible to have NaN for individual SNPs. Fixes #161
2018-07-26Unittest: added test for forcing and catching floating point errors (this works)Pjotr Prins
2018-07-14Guix: add more build information to the final binaryPjotr Prins
2018-06-29Fix conflictPjotr Prins
2018-06-29Merge branch 'master' of github.com:genetics-statistics/GEMMAPjotr Prins
2018-06-05Typo: sepcified -> specifiedDylan Aïssi
2018-02-28MinGW mkdir function doesn't allow for S_IRWXU, paramsDannyArends
2018-02-28renamed import io.h to gemma_io.hDannyArends
2018-02-28io.h is a std lib function for MinGW64, renamed it to gemma_io.hDannyArends
2018-02-22Changed handling of version number so it does not modify every compilePjotr Prins
2018-01-27Extra error info on strtok parsing failure - should help supportPjotr Prins
2018-01-26Always check input data for strtok - unless -no-check is usedPjotr Prins
2018-01-26Change OpenBLAS warningPjotr Prins
2017-12-19Documentation and Travis fixesPjotr Prins
2017-12-19Make eigelib -legacyPjotr Prins
2017-12-17Reverted on using eigenlib_dgemm because of hanging K compute with datasetPjotr Prins
2017-12-17BimbamKin: show error when genotypes do not matchPjotr Prins
2017-12-12Updated copyright infoPjotr Prins
2017-12-08Changed banner and behaviourPjotr Prins
2017-12-08Legacy mode does not show logl_H1 column in outputPjotr Prins
2017-12-08Drop legacy eigenlib_dgemm from fastblasPjotr Prins
2017-12-08Reduce debug noise levelsPjotr Prins
2017-12-07Improve error messages, closes ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/116
2017-12-07Travis: fixesPjotr Prins
2017-12-07More notes and removed unused LULndetPjotr Prins
2017-12-07Some more overflow checksPjotr Prins
2017-12-06Some cleanup on matrix checkingPjotr Prins
2017-12-06Fix openblas complaintPjotr Prins
2017-12-06Integer overflow checking for matrix dgemm and adding path for OpenBlas ↵Pjotr Prins
include files
2017-11-30Fixed never-ending run when analyzing only a single SNP, refPjotr Prins
https://groups.google.com/forum/#!topic/gemma-discussion/a-ommTiucC8
2017-11-22Explicit include of gsl_sys.h for GSLv1Pjotr Prins
2017-11-22Remove compiler warningsPjotr Prins
2017-11-22Remove compiler warnings and add check is_nanPjotr Prins
2017-11-15Nans: introducing checking on mem freePjotr Prins
2017-11-11Fix compiler warningsPjotr Prins
2017-11-11Cleaning up buffer use thanks to compiler warningsPjotr Prins
2017-11-11Cleaning up compiler warningsPjotr Prins
2017-11-10Remove compiler warningsPjotr Prins
2017-11-10Tests: added more bslmm testsPjotr Prins
2017-11-09Adding tests for bslmmPjotr Prins
2017-11-09Disabled debug output when not using -debugPjotr Prins
2017-10-26VERSION now contains the GEMMA version number. A script generates a headerPjotr Prins
file named ./src/version.h. See Makefile for details.
2017-10-26Changed SNPs into SNPs/var in output, ref ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/107#issuecomment-339475978
2017-10-26Get rid of compiler warningPjotr Prins
2017-10-26Changed SNPs into SNPs/var in output, ref ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/107#issuecomment-339475978
2017-10-23Travis-ci:Pjotr Prins
- Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults
2017-10-20NaN check only when -debug is usedPjotr Prins
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