about summary refs log tree commit diff
path: root/src
AgeCommit message (Collapse)Author
6 daysAllow skipping out of loop with LOCO HEAD masterPjotr Prins
6 daysCompute K for GbPjotr Prins
8 daysSupport loco for mdb kinship computePjotr Prins
9 daysLOCO support works for mdbPjotr Prins
9 daysAdding loco support for mdbPjotr Prins
9 daysFor LOCO we wont use gwassnpsPjotr Prins
9 daysAdd support for Gb genotype byte representationPjotr Prins
10 daysOutput is on par with earlier gemma - only allele values are missingPjotr Prins
10 daysRename to MarkerInfoPjotr Prins
10 daysReplace tuple with aggregatePjotr Prins
10 daysCompute maf againPjotr Prins
11 daysOutput has same values as original!Pjotr Prins
11 daysPass in markerinfoPjotr Prins
11 daysUnpack markerPjotr Prins
11 dayskeysPjotr Prins
12 daysWorking on outputPjotr Prins
12 daysWriting output local to functionPjotr Prins
12 daysPass in snp infoPjotr Prins
12 daysUnpack key to get chr,pos,markerPjotr Prins
12 daysSome outputPjotr Prins
12 daysTrying to optimize mdb read-aheadPjotr Prins
12 daysCompiler warnings and some output for KPjotr Prins
13 daysStarted generating outputPjotr Prins
13 daysAll SNPs computedPjotr Prins
13 daysCode loads markers - getting ready to computePjotr Prins
13 daysCopy function so I can modifyPjotr Prins
14 daysSet up lmdb reading of geno file againPjotr Prins
14 daysRefactoringPjotr Prins
14 daysAlmost ready to run GWAPjotr Prins
14 daysRefactoringPjotr Prins
14 daysmdb gwaPjotr Prins
14 daysWiring in mdb GWAPjotr Prins
14 daysToyed a bit with SNP filtering. I think my unfiltered approach for computing ↵Pjotr Prins
GRM is probably more accurate and faster without any SNP filtering.
2025-11-30Extracting MAF computationPjotr Prins
2025-11-30Write out KPjotr Prins
2025-11-30K: reads geno mdbPjotr Prins
2025-11-30Fetch ni_total from lmdbPjotr Prins
2025-11-29Introduce lmdb++Pjotr Prins
2025-11-28Toying with lmdbiPjotr Prins
2025-11-28Simplify a bit and make guix.scm work without running out of RAMPjotr Prins
2025-11-28working on mdbPjotr Prins
2025-11-28Prepare for using mdb geno in a testPjotr Prins
2025-11-27Introduce first testPjotr Prins
2025-11-27Update copyrightsPjotr Prins
2025-11-27Get rid of compiler warning for binPjotr Prins
2025-11-27Changing namings to bimbam to make clearerPjotr Prins
2025-11-27No one uses these uchar versionsPjotr Prins
2025-11-27Display banner and version infoPjotr Prins
2025-11-27Minor tweaksPjotr Prins
2025-11-26Fix progress bar and test larger filePjotr Prins
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-12-15 01:07:13 +0000