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authorPjotr Prins2018-01-26 10:57:14 +0000
committerPjotr Prins2018-01-26 10:57:14 +0000
commitb0d31fa2631622d09730c85b5ce3e82b4886dd45 (patch)
treec35879b1e77dfb546ae8c2abe7bc8ea8a058ef53 /src
parent3293f7e6456574272418b16f4a5ba22f60f8d67a (diff)
downloadpangemma-b0d31fa2631622d09730c85b5ce3e82b4886dd45.tar.gz
Always check input data for strtok - unless -no-check is used
Diffstat (limited to 'src')
-rw-r--r--src/debug.cpp2
-rw-r--r--src/io.cpp1
2 files changed, 2 insertions, 1 deletions
diff --git a/src/debug.cpp b/src/debug.cpp
index fd94f1e..45e57d7 100644
--- a/src/debug.cpp
+++ b/src/debug.cpp
@@ -143,7 +143,7 @@ gsl_vector *gsl_vector_safe_alloc(size_t n) {
char *do_strtok_safe(char *tokenize, const char *delimiters, const char *__pretty_function, const char *__file, int __line) {
auto token = strtok(tokenize,delimiters);
- if (token == NULL && (is_debug_mode() || is_strict_mode()))
+ if (token == NULL && is_check_mode())
fail_at_msg(__file,__line,string("strtok failed in ") + __pretty_function);
return token;
}
diff --git a/src/io.cpp b/src/io.cpp
index d20b473..941bacf 100644
--- a/src/io.cpp
+++ b/src/io.cpp
@@ -707,6 +707,7 @@ bool ReadFile_geno(const string &file_geno, const set<string> &setSnps,
if (indicator_idv[i] == 0)
continue;
+ enforce_msg(ch_ptr,"Problem reading geno file");
if (strcmp(ch_ptr, "NA") == 0) {
gsl_vector_set(genotype_miss, c_idv, 1);
n_miss++;