| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 32 hours | Delete Packages: Move packages to another repository HEAD master | Frederick Muriuki Muriithi | |
| Move the dependencies for the `aider` tool out to a separate repository, specifically https://git.genenetwork.org/ai-tools/ since they are not directly related to guix-bioinformatics. Work on defining `aider` and its dependencies will continue in that other repository. | |||
| 4 days | Fix (vg) v1.65.0 with vcflib build [AI] | pjotrp | |
| 4 days | Fix (vcflib) upgrade to latest 1.0.15 | pjotrp | |
| Includes vcflib CMake patch that will be merged upstream. | |||
| 4 days | Bump (vcflib) version to 1.0.15. Remove wfa2-lib-static package | pjotrp | |
| 4 days | fix (vcflib) zig support added back in | pjotrp | |
| 4 days | Updated (wfa2lib) to latest version and simplified package definition [AI] | pjotrp | |
| 4 days | simplify(vcflib): moving patches to main vcflib source tree [AI] | pjotrp | |
| 4 days | Added tests(vcflib) | pjotrp | |
| 4 days | Updated (vg) now uses last vcflib release without vendoring v1.0.7. | pjotrp | |
| Still, it would be good to fix the includes in vcflib itself. | |||
| 4 days | python-build: Add new package definition. | Frederick Muriuki Muriithi | |
| 4 days | python-typing-inspection: Add new package definition. | Frederick Muriuki Muriithi | |
| 4 days | python-backoff: Add new package definition. | Frederick Muriuki Muriithi | |
| 4 days | python-annotated-doc: Add new package definition. | Frederick Muriuki Muriithi | |
| 4 days | python-oslex: Add new package definition. | Frederick Muriuki Muriithi | |
| 4 days | python-mslex: Add new package definition. | Frederick Muriuki Muriithi | |
| 4 days | Move wfa2-lib ahead of where it is used. | Arun Isaac | |
| 4 days | Deprecate wfmash 0.14 in favour of latest. | Arun Isaac | |
| 8 days | Add (R/shiny system containers) two system containers added for xushenglab [AI] | pjotrp | |
| Two R/shiny system containers added jumpsem and jumpshiny that we were running ad hoc | |||
| 10 days | Add R packages for jumpshiny, Jumpsem_web | pjotrp | |
| Add package for vg that vendors in older vcflib - this will change soon. | |||
| 13 days | fix vcflib | pjotrp | |
| 2026-03-10 | Use license: | pjotrp | |
| 2026-03-05 | Import r-dendextend and r-gggenes for cosigt workflow | pjotrp | |
| 2026-02-27 | Add liftoff. | Arun Isaac | |
| Change-Id: I8155083427bef2d4652e32e8b1f6a833bfd7c011 | |||
| 2026-02-27 | Add python-parasail. | Arun Isaac | |
| Change-Id: I2002ccfc73ab5205b01a430f5be89e976b563765 | |||
| 2026-02-27 | Add parasail. | Arun Isaac | |
| Change-Id: Ibd442b9414910bdb7566feb6c5f6523313ecbd16 | |||
| 2026-02-25 | Import missing modules for python-curio. | Arun Isaac | |
| Change-Id: Ia5d581ed8b6d89351278dc116db4ac21382198b6 | |||
| 2026-02-25 | Import (guix build-system pyproject). | Arun Isaac | |
| 2026-02-25 | Add python-curio. | Arun Isaac | |
| Upstream removed python-curio. | |||
| 2026-02-25 | Import (gnu packages python-check) for python-nose. | Arun Isaac | |
| Upstream moved python-nose to (gnu packages python-check). | |||
| 2026-02-25 | Add vcflib. | Arun Isaac | |
| Guix upstream removed vcflib. This package is still broken. Nevertheless, we add it to prevent the channel from breaking. | |||
| 2026-02-17 | Update gfaffix to 0.2.1. | Arun Isaac | |
| We update gfaffix to 0.2.1 and move it to the new cargo-inputs style. | |||
| 2026-02-16 | Add python-cfgraph. | Arun Isaac | |
| Upstream removed python-cfgraph. | |||
| 2026-02-16 | Replace python-consul with python-py-consul. | Arun Isaac | |
| Upstream deprecated python-consul in favor of python-py-consul. | |||
| 2026-02-16 | Import (gnu packages python-build) for python-six. | Arun Isaac | |
| Upstream moved python-six to (gnu packages python-build). | |||
| 2026-01-23 | gn: mummer: Update to 4.0.1. | Arun Isaac | |
| 2026-01-20 | gn: Add python-traceback2. | Arun Isaac | |
| python-traceback2 was removed from Guix upstream. | |||
| 2026-01-05 | gn: Add python-pyux. | Arun Isaac | |
| python-pyux was removed from Guix upstream. | |||
| 2025-12-21 | gn: Add moosefs so we can replace lizardfs on octopus | pjotrp | |
| * gn/packages/file-systems.scm (moosefs): New variable. | |||
| 2025-12-18 | gn: smoothxg: Update to 0.8.2. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (smoothxg): Update to 0.8.2. | |||
| 2025-12-15 | Update guile sheepdog to 1426617. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-12-15 | Update guile-sheepdog to 1b2d120. | Munyoki Kilyungi | |
| 2025-12-15 | Add redis as a requirement for guile-sheepdog service. | Munyoki Kilyungi | |
| 2025-12-09 | Update gn-libs. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-12-09 | Add sheepdog as a service. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-12-09 | Add guile-sheepdog. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-12-01 | Import (gnu packages python-compression) for python-xopen. | Arun Isaac | |
| python-xopen has been moved to (gnu packages python-compression). | |||
| 2025-12-01 | gn: Add python-misaka | Arun Isaac | |
| python-misaka was removed from Guix upstream. | |||
| 2025-12-01 | gn: Add htslib-1.14. | Arun Isaac | |
| htslib-1.14 was removed from Guix upstream. | |||
| 2025-12-01 | gn: Add pbbam. | Arun Isaac | |
| pbbam was removed from Guix upstream. | |||
| 2025-11-26 | Genenetwork3: Upgrade to commit e6c4457. | Frederick Muriuki Muriithi | |
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
| about summary refs log tree commit diff |