| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 29 hours | genenetwork2: upgrade to commit e00d5ad. HEAD master | Frederick Muriuki Muriithi | |
| 30 hours | genenetwork2: upgrade to commit 7add12a. | Frederick Muriuki Muriithi | |
| 32 hours | genenetwork3: Upgrade to commit d24ffc9. | Frederick Muriuki Muriithi | |
| 32 hours | gn-auth: Upgrade to commit 9839e5b. | Frederick Muriuki Muriithi | |
| 33 hours | python2-six: import from (past packages python27) | Frederick Muriuki Muriithi | |
| python2-six was deleted on mainline guix and moved to guix-past. | |||
| 33 hours | guix-past: Update channel commit. | Frederick Muriuki Muriithi | |
| 33 hours | python-unittest2: Copy deleted package over from guix mainline | Frederick Muriuki Muriithi | |
| Certain packages in guix-bioinformatics have `python-unittest2` as a dependency, but the package was deleted from guix mainline. This commit copies the deleted package definition over to guix-bioinformatics and includes the module where the package is used. | |||
| 33 hours | python-nosexcover: Copy deleted package from mainline guix | Frederick Muriuki Muriithi | |
| Copy over the package deleted in mainline guix over to guix-bioinformatics. | |||
| 33 hours | Upgrade dependency version: llvm 6 -> 12. | Frederick Muriuki Muriithi | |
| 33 hours | Replace modules with the (past-crates packages crates-io) module | Frederick Muriuki Muriithi | |
| Replace the following rust modules with the (past-crates packages crates-io) where all the older rust packages were moved: * #:use-module (gnu packages crates-io) * #:use-module (gnu packages crates-check) * #:use-module (gnu packages crates-windows) * #:use-module (gnu packages crates-graphics) * #:use-module (gnu packages crates-compression) | |||
| 33 hours | Add guix-rust-past-crates to list of channel dependencies. | Frederick Muriuki Muriithi | |
| Old rust packages have been removed from mainline guix and moved to the guix-rust-past-crates channel. This commit provides the channel giving access to the old packages. | |||
| 33 hours | Remove obsolete dependencies | Frederick Muriuki Muriithi | |
| * python-pytest-cache: integrated into core python-pytest | |||
| 33 hours | Replace tensorflow with tensorflow-lite. | Frederick Muriuki Muriithi | |
| The package `tensorflow` no longer exists on mainline guix, and it seems to have been replaced by `tensorflow-lite`. This commit updates the packages with `tensorflow` as a dependency to instead depend on `tensorflow-lite`. | |||
| 4 days | Replace (gnu packages fpga) with (gnu packages electronics). | Frederick Muriuki Muriithi | |
| 4 days | python2-six no longer exists upstream: remove it. | Frederick Muriuki Muriithi | |
| 5 days | Update pinned guix to commit 0a474070. | Frederick Muriuki Muriithi | |
| 6 days | genenetwork2: Upgrade to commit 6f7a6a2. | Frederick Muriuki Muriithi | |
| 6 days | genenetwork3: Upgrade to commit 082d585. | Frederick Muriuki Muriithi | |
| 6 days | gn-guile: Upgrade to commit 454244b. | Frederick Muriuki Muriithi | |
| 2025-09-06 | README: Update channel URL. | Arun Isaac | |
| 2025-09-05 | genenetwork3: Add r-thor to genenetwork3. | Alexander_Kabui | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add r-thor. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-09-05 | gn: Add r-thor. | Alexander_Kabui | |
| * gn/packages/statistics.scm (r-thor): New variable. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-09-03 | <virtuoso-configuration>: Enter 'ErrorLogFile' in config file. | Frederick Muriuki Muriithi | |
| 2025-09-03 | <virtuoso-configuration>: Add 'error-log-file' setting. | Frederick Muriuki Muriithi | |
| Enable setting up an explicit path to virtuoso's error logs. | |||
| 2025-09-03 | gn: Add julia-jwas. | Arun Isaac | |
| * gn/packages/julia.scm (julia-jwas): New variable. | |||
| 2025-09-03 | gn: Add julia-progressmeter. | Arun Isaac | |
| * gn/packages/julia.scm (julia-progressmeter): New variable. | |||
| 2025-09-03 | gn: Add r-genio. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (r-genio): New variable. | |||
| 2025-09-03 | Add ruby-rdf-raptor | pjotrp | |
| 2025-09-02 | Fix dhcp-client-service-type warnings | pjotrp | |
| 2025-09-02 | ruby-rdf-raptor: new variable | pjotrp | |
| 2025-09-01 | ruby-rdf: New variable with dependencies | pjotrp | |
| This is to add Ruby-RDF. Note that these are completely untested at this point. | |||
| 2025-08-28 | genenetwork2: update to commit 2881fd0. | Frederick Muriuki Muriithi | |
| 2025-08-28 | gn-uploader: Update to commit c348539. | Frederick Muriuki Muriithi | |
| 2025-08-27 | gn-auth: Upgrade to commit 33418d9. | Frederick Muriuki Muriithi | |
| 2025-08-26 | gn-uploader: Upgrade to commit 819e5b3. | Frederick Muriuki Muriithi | |
| 2025-08-22 | gn: javascript-marked-highlight: Install marked-highlight.js. * ↵ | Alexander_Kabui | |
| gn/packages/javascript.scm (javascript-marked-highlight): Rename built file to marked-highlight.js and install it under share/genenetwork2/javascript/marked. | |||
| 2025-08-22 | gn: genenetwork2: Install xterm js and css under xterm dir. * ↵ | Alexander_Kabui | |
| gn/packages/javacript.scm (javascript-xterm): Install xterm files to share/genenetwork2/javascript/xterm. * gn/packages/javacript.scm (javascript-xterm-style): Install xterm files to "share/genenetwork2/javascript/xterm. | |||
| 2025-08-21 | genenetwork2: Upgrade to commit eecad67. | Frederick Muriuki Muriithi | |
| 2025-08-21 | genenetwork2: Upgrade to commit 07f9273. | Frederick Muriuki Muriithi | |
| 2025-08-21 | genenetwork2: Upgrade to commit 5bb1bea. | Frederick Muriuki Muriithi | |
| 2025-08-21 | javascript-xterm-style: Fix build | Frederick Muriuki Muriithi | |
| * Use archive from NPM registry rather than minified file from CDN * Modify phases to fix minor build issues. | |||
| 2025-08-21 | javascript-xterm: Update build | Frederick Muriuki Muriithi | |
| * Fetch archive from NPM registry rather than from CDN * Copy minified files directly to store | |||
| 2025-08-21 | javascript-marked-highlight: Use raw files and minify them ourselves | Frederick Muriuki Muriithi | |
| * Relying on pre-minified files leads to changes in the hash value if the files are reprocessed by the CDN. | |||
| 2025-08-20 | gn-uploader: Upgrade to commit f98d99b. | Frederick Muriuki Muriithi | |
| 2025-08-18 | nss-certs: Update source module in services. | Frederick Muriuki Muriithi | |
| 2025-08-18 | Update the module from which nss-certs is imported. | Frederick Muriuki Muriithi | |
| 2025-08-18 | Update pinned guix channel to commit 34453b9. | Frederick Muriuki Muriithi | |
| 2025-08-16 | ruby-lmdb: upgrade | pjotrp | |
| 2025-08-15 | gn-guile: Update to commit 289da2e. | Frederick Muriuki Muriithi | |
| 2025-08-14 | Use newer version of python-mysqlclient. | Frederick Muriuki Muriithi | |
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index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
| about summary refs log tree commit diff |