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2022-04-14notebooks: move nb-uploadjgart
2022-04-14nb-upload: update to b285302jgart
2022-04-14Update genetwork3 to 39afc68BonfaceKilz
* gn/packages/genenetwork.scm: Update commit and hash.
2022-04-14gn: tissue: Update to 0.1.0-0.85811ab.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.85811ab.
2022-04-13Update GN3 to latest commitFrederick Muriuki Muriithi
GN2 on the testing branch relies on features in GN3 that are not present in commit 16367dab9248d3aa2660e0b5cafdce25e8f7067c of GN3. This commit thus updates the dependency to get the latest version of GN3 that is building successfully. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2022-04-12gn: python-rpy2-next: Remove package.Alexander
python-rpy2@3.4.5 has been upstreamed. * gn/packages/python.scm (python-rpy2-next): Delete variable. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Replace python-rpy2-next with python-rpy2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2022-04-12gn: r-ctl: Update to 1.0.0-7.Alexander
* gn/packages/statistics.scm (r-ctl): Update to 1.0.0-7. [source]: Use cran-uri. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2022-04-10gn: vg: Update to 1.39.0.Efraim Flashner
2022-04-08gn: Add smithwaterman-static.Arun Isaac
* gn/packages/static.scm (smithwaterman-static): New variable.
2022-04-07qc: update to a0d8c80jgart
change unlicense
2022-04-07nb-upload: update to 3e8fe60jgart
2022-04-07binderlite: add nb-uploadjgart
2022-04-06gn: tissue: Substitute git path in tissue/git.scm.Arun Isaac
* gn/packages/gemini.scm (tissue)[arguments]: In the custom configure phase, substitute absolute path to git in tissue/git.scm, but not in tissue/web.scm.
2022-04-06quality-control: add WIP sbcl-qc-uploads packagejgart
2022-04-06move sbcl-qc to quality-control modulejgart
2022-04-06gn: tissue: Update to 0.1.0-0.25104d4.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.25104d4.
2022-04-06gn: skribilo-with-gemtext-reader: Update to 0.9.5-0.8d4f4c8.Arun Isaac
* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Update to 0.9.5-0.8d4f4c8.
2022-04-05remove python-dotenv-for-binderlitejgart
upstreamed: https://issues.guix.gnu.org/54712
2022-04-04add python-dotenv-for-binderlitejgart
2022-04-04gn: packages: python: add python-supervisorjgart
todo: fix tests: https://github.com/NixOS/nixpkgs/blob/nixos-21.11/pkgs/development/python-modules/supervisor/default.nix#L16
2022-04-04gn: binderlite: add python-jgart-giturlparsejgart
2022-04-04gn: gem5: Prepare for test suite.Efraim Flashner
2022-04-03gn: Some packages upstreamedEfraim Flashner
2022-04-01gn: wfmash-static: Set name to wfmash-static.Arun Isaac
* gn/packages/static.scm (wfmash-static)[name]: Set to wfmash-static.
2022-04-01gn: Add wfmash-static.Arun Isaac
* gn/packages/static.scm: Import (gnu packages bioinformatics), (gnu packages compression), (gnu packages cpp), (gnu packages jemalloc), (gnu packages maths), (guix gexp) and (guix utils). (htslib-minimal, wfmash-static): New variables.
2022-04-01gn: hello-static: Move to gn/packages/static.scm.Arun Isaac
* gn/packages/riscv.scm: Do not import (gnu packages base), (guix packages) and (guix build-system gnu). (hello-static): Move to gn/packages/static.scm. * gn/packages/static.scm: New file.
2022-04-01gn: riscv-pk: Remove package.Arun Isaac
riscv-pk has been upstreamed. * gn/packages/virtualization.scm: Do not import (guix build-system gnu) and (gnu packages cross-base). (riscv-pk): Delete variable.
2022-04-01gn: wfmash: Remove package.Arun Isaac
wfmash has been upstreamed. * gn/packages/riscv.scm (wfmash): Delete variable.
2022-03-31don't break guix pullEfraim Flashner
2022-03-31gn: Update gfaffix to 0.1.3Efraim Flashner
2022-03-29gn: hello-static: Set name to hello-static.Arun Isaac
* gn/packages/riscv.scm (hello-static)[name]: Set to hello-static.
2022-03-29gnu: riscv-pk: Do not strip symbols fromhost and tohost.Arun Isaac
* gn/packages/virtualization.scm (riscv-pk)[arguments]: Keep symbols fromhost and tohost while stripping.
2022-03-29gnu: hello: Use static-package.Arun Isaac
* gn/packages/riscv.scm: Import (guix build-system gnu). (hello): Use static-package.
2022-03-24gnu: tissue: Update to 0.1.0-0.b154339.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.b154339. [arguments]: Import target-guile-effective-version from (guix build guile-build-system). Wrap executable to set GUILE_LOAD_PATH and GUILE_LOAD_COMPILED_PATH.
2022-03-24gn: skribilo-with-gemtext-reader: Update to 0.9.5-0.183eb12.Arun Isaac
* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Update to 0.9.5-0.183eb12.
2022-03-23lisp: remove upstreamed cl-ningle updatesjgart
MERGED https://issues.guix.gnu.org/54503
2022-03-23gn: gem5: install configs, wrap binaries.Efraim Flashner
2022-03-23gn: skribilo-with-gemtext-reader: Update to skribilo-0.9.5-0.fb51be9BonfaceKilz
Building tissue was failing because of this package. * gn/packages/gemini.scm : Use commit "fb51be990a4bb8fb76373b519edfcf11390dcca1". [package]: Use above commit. Update hash.
2022-03-23gn: Add hello-staticEfraim Flashner
2022-03-23gn: gem5: unbundle pybind11Efraim Flashner
2022-03-23gn: Add riscv-pk.Efraim Flashner
2022-03-21lisp: add sbcl-ninglejgart
https://issues.guix.gnu.org/54503
2022-03-21gn: wfmash: update to 0.7.0-26.81b8292.Efraim Flashner
2022-03-20gn: Add gem5.Efraim Flashner
2022-03-20gn: upstream python-scikit-allelEfraim Flashner
2022-03-16gn: genenetwork3: Update to 0.1.0-2.16367da.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.16367da.
2022-03-16gn: Add python-pixy.Efraim Flashner
2022-03-16gn: genenetwork2: Move pytest and pytest-mock to propagated-inputsBonfaceKilz
These packages are required in the propagated-inputs so that they can be run locally. * gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and pytest to... [propagated-inputs]: here.
2022-03-16gn: genenetwork2: Add pytest and pytest-mockBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and pytest-mock
2022-03-14gn: Add wfmash.Arun Isaac
This patch adds a version of wfmash that builds and runs successfully on RISC-V. * gn/packages/riscv.scm: New file.
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