diff options
author | Efraim Flashner | 2022-04-03 14:19:38 +0300 |
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committer | Efraim Flashner | 2022-04-03 14:19:38 +0300 |
commit | 7e8a1de4b293e5e1d4c0c5e3694acb144a145635 (patch) | |
tree | cf554612728670c783a58a5f59068b7ba2914368 /gn/packages | |
parent | ee118d7a5d56e52c360c3730bde818d61cacbceb (diff) | |
download | guix-bioinformatics-7e8a1de4b293e5e1d4c0c5e3694acb144a145635.tar.gz |
gn: Some packages upstreamed
Diffstat (limited to 'gn/packages')
-rw-r--r-- | gn/packages/crates-io.scm | 348 |
1 files changed, 33 insertions, 315 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 7485327..c43b714 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -140,6 +140,7 @@ or any combination.") (description "Rust CLI tools for manipulation of Jupyter Notebooks.") (license #f)))) ; There is no license. +;; replace fields with those from upstream (define-public rust-clap-3.1 (package (name "rust-clap") @@ -153,8 +154,7 @@ or any combination.") (base32 "08q1hkksfixybnrwrpm44xq028wbn9yr2hnzrax9hihyq8v39jfq")))) (build-system cargo-build-system) (arguments - `(#:tests? #f ; Skip the tests for now - #:cargo-inputs + `(#:cargo-inputs (("rust-atty" ,rust-atty-0.2) ("rust-backtrace" ,rust-backtrace-0.3) ("rust-bitflags" ,rust-bitflags-1) @@ -169,14 +169,13 @@ or any combination.") ("rust-textwrap" ,rust-textwrap-0.15) ("rust-unicase" ,rust-unicase-2) ("rust-yaml-rust" ,rust-yaml-rust-0.4)) - ;#:cargo-development-inputs - ;(("rust-criterion" ,rust-criterion-0.3) - ; ("rust-lazy-static" ,rust-lazy-static-1) - ; ("rust-regex" ,rust-regex-1) - ; ("rust-rustversion" ,rust-rustversion-1) - ; ("rust-trybuild" ,rust-trybuild-1) - ; ("rust-trycmd" ,rust-trycmd-0.12)) - )) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-regex" ,rust-regex-1) + ("rust-rustversion" ,rust-rustversion-1) + ("rust-trybuild" ,rust-trybuild-1) + ("rust-trycmd" ,rust-trycmd-0.12)))) (home-page "https://github.com/clap-rs/clap") (synopsis "A simple to use, efficient, and full-featured Command Line Argument Parser") @@ -185,6 +184,8 @@ or any combination.") Argument Parser") (license (list license:expat license:asl2.0)))) +;; ready to upstream, WITH rust-clap-derive +;; replace fields with those from upstream. (define-public rust-clap-derive-3.1 (package (name "rust-clap-derive") @@ -211,33 +212,6 @@ or any combination.") "Parse command line argument by defining a struct, derive crate.") (license (list license:expat license:asl2.0)))) -(define-public rust-os-str-bytes-6 - (package - (name "rust-os-str-bytes") - (version "6.0.0") - (source - (origin - (method url-fetch) - (uri (crate-uri "os-str-bytes" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "0r5z5xds2wzzqlqjaw96dpjsz5nqyzc1rflm4mh09aa32qyl88lf")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-memchr" ,rust-memchr-2) - ("rust-print-bytes" ,rust-print-bytes-0.5) - ("rust-uniquote" ,rust-uniquote-3)) - ;#:cargo-development-inputs - ;(("rust-getrandom" ,rust-getrandom-0.2)) - )) - (home-page "https://github.com/dylni/os_str_bytes") - (synopsis - "Utilities for converting between byte sequences and platform-native strings") - (description - "Utilities for converting between byte sequences and platform-native strings") - (license (list license:expat license:asl2.0)))) - (define-public rust-textwrap-0.15 (package (name "rust-textwrap") @@ -251,20 +225,20 @@ or any combination.") (base32 "1yw513k61lfiwgqrfvsjw1a5wpvm0azhpjr2kr0jhnq9c56is55i")))) (build-system cargo-build-system) (arguments - `(#:tests? #f ; Skip tests for now + `(#:skip-build? #t ; Not all inputs packaged + ;#:tests? #f ; Skip tests for now #:cargo-inputs (("rust-hyphenation" ,rust-hyphenation-0.8) ("rust-smawk" ,rust-smawk-0.3) ("rust-terminal-size" ,rust-terminal-size-0.1) ("rust-unicode-linebreak" ,rust-unicode-linebreak-0.1) ("rust-unicode-width" ,rust-unicode-width-0.1)) - ;#:cargo-development-inputs - ;(("rust-criterion" ,rust-criterion-0.3) - ; ("rust-lipsum" ,rust-lipsum-0.8) - ; ("rust-termion" ,rust-termion-1) - ; ("rust-unic-emoji-char" ,rust-unic-emoji-char-0.9) - ; ("rust-version-sync" ,rust-version-sync-0.9)) - )) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3) + ("rust-lipsum" ,rust-lipsum-0.8) + ("rust-termion" ,rust-termion-1) + ;("rust-unic-emoji-char" ,rust-unic-emoji-char-0.9) + ("rust-version-sync" ,rust-version-sync-0.9)))) (home-page "https://github.com/mgeisler/textwrap") (synopsis "Powerful library for word wrapping, indenting, and dedenting strings") @@ -285,7 +259,9 @@ or any combination.") (base32 "1rwa5nzq8c5zg7lqmpkf7hyib415yxshd9amp911y8w1zss4s38p")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs + `(;#:skip-build? #t ; Not all inputs at correct versions? + ;#:tests? #f ; Skip tests for now + #:cargo-inputs (("rust-backtrace" ,rust-backtrace-0.3) ("rust-concolor" ,rust-concolor-0.0.8) ("rust-content-inspector" ,rust-content-inspector-0.2) @@ -312,221 +288,6 @@ or any combination.") (description "Snapshot testing for a herd of CLI tests") (license (list license:expat license:asl2.0)))) -(define-public rust-smawk-0.3 - (package - (name "rust-smawk") - (version "0.3.1") - (source - (origin - (method url-fetch) - (uri (crate-uri "smawk" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "0hv0q1mw1r1brk7v3g4a80j162p7g1dri4bdidykrakzfqjd4ypn")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-ndarray" ,rust-ndarray-0.14)) - ;#:cargo-development-inputs - ;(("rust-num-traits" ,rust-num-traits-0.2) - ; ("rust-rand" ,rust-rand-0.8) - ; ("rust-rand-chacha" ,rust-rand-chacha-0.3) - ; ("rust-version-sync" ,rust-version-sync-0.9)) - )) - (home-page "https://github.com/mgeisler/smawk") - (synopsis "Functions for finding row-minima in a totally monotone matrix.") - (description - "This package provides functions for finding row-minima in a totally monotone -matrix.") - (license license:expat))) - -(define-public rust-unicode-linebreak-0.1 - (package - (name "rust-unicode-linebreak") - (version "0.1.2") - (source - (origin - (method url-fetch) - (uri (crate-uri "unicode-linebreak" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "0grq6bsn967q4vpifld53s7a140nlmpq5vy8ghgr73f4n2mdqlis")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-regex" ,rust-regex-1)))) - (home-page "https://github.com/axelf4/unicode-linebreak") - (synopsis "Implementation of the Unicode Line Breaking Algorithm") - (description "Implementation of the Unicode Line Breaking Algorithm") - (license license:asl2.0))) - -(define-public rust-lipsum-0.8 - (package - (name "rust-lipsum") - (version "0.8.0") - (source - (origin - (method url-fetch) - (uri (crate-uri "lipsum" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "0sn5k0hgx099x2qdx0xlx8a5b74sfc55qnbyrhnh72baqxqp5vj2")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-rand" ,rust-rand-0.8) - ("rust-rand-chacha" ,rust-rand-chacha-0.3)) - ;#:cargo-development-inputs - ;(("rust-version-sync" ,rust-version-sync-0.9)) - )) - (home-page "https://github.com/mgeisler/lipsum/") - (synopsis - "Lipsum is a lorem ipsum text generation library. Use this if you need -some filler text for your application. - -The text is generated using a simple Markov chain, which you can also -instantiate to generate your own pieces of pseudo-random text. -") - (description - "Lipsum is a lorem ipsum text generation library. Use this if you need some -filler text for your application. - -The text is generated using a simple Markov chain, which you can also -instantiate to generate your own pieces of pseudo-random text.") - (license license:expat))) - -(define-public rust-print-bytes-0.5 - (package - (name "rust-print-bytes") - (version "0.5.0") - (source - (origin - (method url-fetch) - (uri (crate-uri "print-bytes" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "0d4i9y3jx1chi6w97a8rgdbwm9g3cppr53rw53zl6fcaq31qx0b6")))) - (build-system cargo-build-system) - (arguments - `(#:tests? #f ; Skip tests for now - #:cargo-inputs - (("rust-winapi" ,rust-winapi-0.3)) - ;#:cargo-development-inputs - ;(("rust-os-str-bytes" ,rust-os-str-bytes-4)) - )) - (home-page "https://github.com/dylni/print_bytes") - (synopsis "Print bytes as losslessly as possible") - (description "Print bytes as losslessly as possible") - (license (list license:expat license:asl2.0)))) - -(define-public rust-uniquote-3 - (package - (name "rust-uniquote") - (version "3.1.0") - (source - (origin - (method url-fetch) - (uri (crate-uri "uniquote" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "1bkl0n41yvs415mqny4b434kr456ysnb3dhic1zrrzppwx95jvxa")))) - (build-system cargo-build-system) - (home-page "https://github.com/dylni/uniquote") - (synopsis "Quote strings for clear display in output") - (description "Quote strings for clear display in output") - (license (list license:expat license:asl2.0)))) - -(define-public rust-ndarray-0.14 - (package - (name "rust-ndarray") - (version "0.14.0") - (source - (origin - (method url-fetch) - (uri (crate-uri "ndarray" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "011wqzmrd9gpfcfvy1xfbskqfiahn96pmi2d0r9x34d682amq3bc")))) - (build-system cargo-build-system) - (arguments - `(#:skip-build? #t - #:cargo-inputs - (("rust-approx" ,rust-approx-0.4) - ;("rust-blas-src" ,rust-blas-src-0.6) - ("rust-cblas-sys" ,rust-cblas-sys-0.1) - ("rust-matrixmultiply" ,rust-matrixmultiply-0.2) - ("rust-num-complex" ,rust-num-complex-0.3) - ("rust-num-integer" ,rust-num-integer-0.1) - ("rust-num-traits" ,rust-num-traits-0.2) - ("rust-rawpointer" ,rust-rawpointer-0.2) - ("rust-rayon" ,rust-rayon-1) - ("rust-serde" ,rust-serde-1)) - ;#:cargo-development-inputs - ;(("rust-approx" ,rust-approx-0.4) - ; ("rust-defmac" ,rust-defmac-0.2) - ; ("rust-itertools" ,rust-itertools-0.9) - ; ("rust-quickcheck" ,rust-quickcheck-0.9)) - )) - (home-page "https://github.com/rust-ndarray/ndarray") - (synopsis - "An n-dimensional array for general elements and for numerics. Lightweight array views and slicing; views support chunking and splitting.") - (description - "An n-dimensional array for general elements and for numerics. Lightweight array -views and slicing; views support chunking and splitting.") - (license (list license:expat license:asl2.0)))) - -(define-public rust-version-sync-0.9 - (package - (name "rust-version-sync") - (version "0.9.4") - (source - (origin - (method url-fetch) - (uri (crate-uri "version-sync" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "1w0v20p6k13yhfmgmcwhgy3371znyqcn83lhrf47swq7xhf81l4r")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-proc-macro2" ,rust-proc-macro2-1) - ("rust-pulldown-cmark" ,rust-pulldown-cmark-0.8) - ("rust-regex" ,rust-regex-1) - ("rust-semver" ,rust-semver-1) - ("rust-syn" ,rust-syn-1) - ("rust-toml" ,rust-toml-0.5) - ("rust-url" ,rust-url-2)) - #:cargo-development-inputs - (("rust-tempfile" ,rust-tempfile-3)))) - (home-page "https://github.com/mgeisler/version-sync") - (synopsis - "Crate for ensuring that version numbers in README files and other files are kept in sync with the crate version.") - (description - "Crate for ensuring that version numbers in README files and other files are kept -in sync with the crate version.") - (license license:expat))) - -(define-public rust-os-pipe-1 - (package - (name "rust-os-pipe") - (version "1.0.1") - (source - (origin - (method url-fetch) - (uri (crate-uri "os-pipe" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "0mczqmqrkzmln4xg5ki1gwgykf4dsii0h4p7fxf667889ysz54ic")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-libc" ,rust-libc-0.2) - ("rust-winapi" ,rust-winapi-0.3)))) - (home-page "https://github.com/oconnor663/os_pipe.rs") - (synopsis "a cross-platform library for opening OS pipes") - (description "a cross-platform library for opening OS pipes") - (license license:expat))) - (define-public rust-toml-edit-0.12 (package (name "rust-toml-edit") @@ -540,66 +301,23 @@ in sync with the crate version.") (base32 "0wx4wd849bmkqj0gdi041gmpfpvlyhy2ha4zpin69yw9d9npl8cl")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs + `(;#:skip-build? #t ; Not all inputs packaged + ;#:tests? #f ; Skip tests for now + #:cargo-inputs (("rust-combine" ,rust-combine-4) ("rust-indexmap" ,rust-indexmap-1) ("rust-itertools" ,rust-itertools-0.10) ("rust-kstring" ,rust-kstring-1) ("rust-serde" ,rust-serde-1)) - ;#:cargo-development-inputs - ;(("rust-criterion" ,rust-criterion-0.3) - ; ("rust-fs-snapshot" ,rust-fs-snapshot-0.1) - ; ("rust-pretty-assertions" ,rust-pretty-assertions-1) - ; ("rust-serde-json" ,rust-serde-json-1) - ; ("rust-toml" ,rust-toml-0.5) - ; ("rust-toml-test-harness" ,rust-toml-test-harness-0.3)) - )) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3) + ;("rust-fs-snapshot" ,rust-fs-snapshot-0.1) + ;("rust-pretty-assertions" ,rust-pretty-assertions-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-toml" ,rust-toml-0.5) + ;("rust-toml-test-harness" ,rust-toml-test-harness-0.3) + ))) (home-page "https://github.com/ordian/toml_edit") (synopsis "Yet another format-preserving TOML parser.") (description "Yet another format-preserving TOML parser.") (license (list license:expat license:asl2.0)))) - -(define-public rust-kstring-1 - (package - (name "rust-kstring") - (version "1.1.0") - (source - (origin - (method url-fetch) - (uri (crate-uri "kstring" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "1r4n9fa5scikqvl736nxghcfa6s3b07xz61w43hyzs2qb3wmd3nk")))) - (build-system cargo-build-system) - (arguments - `(#:cargo-inputs - (("rust-document-features" ,rust-document-features-0.2) - ("rust-serde" ,rust-serde-1) - ("rust-static-assertions" ,rust-static-assertions-1)) - #:cargo-development-inputs - (("rust-criterion" ,rust-criterion-0.3) - ("rust-proptest" ,rust-proptest-1)))) - (home-page "https://github.com/cobalt-org/kstring") - (synopsis "Key String: optimized for map keys") - (description "Key String: optimized for map keys") - (license (list license:expat license:asl2.0)))) - -(define-public rust-document-features-0.2 - (package - (name "rust-document-features") - (version "0.2.1") - (source - (origin - (method url-fetch) - (uri (crate-uri "document-features" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "121wr2bd8a4s5i5yrxjz8c5amw2l69xmqqma86x6y4xmcgyhj75h")))) - (build-system cargo-build-system) - (home-page "https://slint-ui.com") - (synopsis - "Extract documentation for the feature flags from comments in Cargo.toml") - (description - "Extract documentation for the feature flags from comments in Cargo.toml") - (license (list license:expat license:asl2.0)))) - |