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authorjgart2022-04-06 11:46:55 -0400
committerjgart2022-04-06 11:54:52 -0400
commitb030b089f26f31ff06aa14788820a2b9a25e85b7 (patch)
treee47634794967efac28d9db6b83f1aac20f106977 /gn/packages
parentfabe3c860d9df983b2cc4130fec72296b66408b3 (diff)
downloadguix-bioinformatics-b030b089f26f31ff06aa14788820a2b9a25e85b7.tar.gz
move sbcl-qc to quality-control module
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/lisp.scm41
-rw-r--r--gn/packages/quality-control.scm46
2 files changed, 46 insertions, 41 deletions
diff --git a/gn/packages/lisp.scm b/gn/packages/lisp.scm
index 94a3d9e..50ef3b5 100644
--- a/gn/packages/lisp.scm
+++ b/gn/packages/lisp.scm
@@ -267,44 +267,3 @@ generators.")
(define-public ecl-scribble
(sbcl-package->ecl-package sbcl-scribble))
-(define-public sbcl-qc
- (let ((commit "89a2f2e09f67d5bc5b7be6726a75f82c8d3a82b9")
- (revision "2"))
- (package
- (name "sbcl-qc")
- (version (git-version "20220301" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://git.genenetwork.org/jgart/qc")
- (commit commit)))
- (sha256
- (base32 "0dlaxdzrpagn18jxy3kzzf1bwn55prdjpzw256hnjbvmnx5w5fd7"))
- (file-name (git-file-name name commit))))
- (build-system asdf-build-system/sbcl)
- (arguments
- `(#:asd-files '("qc.asd")))
- (native-inputs
- (list sbcl-1am))
- (inputs
- (list sbcl-alexandria
- sbcl-split-sequence))
- (home-page "https://git.genenetwork.org/jgart/qc/")
- (synopsis "Quality control of delimited files")
- (description
-"@code{cl-qc} is a Common Lisp library for linting the following in
-delimited text files:
-@itemize
-@item Whitespace
-@item Floating-point number well-formedness
-@item GeneChip Platform ID checks for Affymetrix, Illumina, and others
-@end itemize\n")
- (license license:llgpl))))
-
-(define-public cl-qc
- (sbcl-package->cl-source-package sbcl-qc))
-
-(define-public ecl-qc
- (sbcl-package->ecl-package sbcl-qc))
-
diff --git a/gn/packages/quality-control.scm b/gn/packages/quality-control.scm
index 162b025..dd3c779 100644
--- a/gn/packages/quality-control.scm
+++ b/gn/packages/quality-control.scm
@@ -5,6 +5,9 @@
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system asdf)
+ #:use-module (gnu packages lisp-check)
+ #:use-module (gnu packages lisp-xyz)
#:use-module (gnu packages))
(define-public libcsv
@@ -33,3 +36,46 @@
"CSV library written in pure ANSI C that can read and write CSV data.")
(license license:lgpl2.1+))))
+(define-public sbcl-qc
+ (let ((commit "ed4254445b7dc247fa27d9189fd03841ad74f568")
+ (revision "3"))
+ (package
+ (name "sbcl-qc")
+ (version (git-version "20220331" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://git.genenetwork.org/jgart/qc")
+ (commit commit)))
+ (sha256
+ (base32 "12i9s1ipqarvq6gsjqycfm8d3ym7dv7vn3nxb5c6214xrd4mmzjj"))
+ (file-name (git-file-name name commit))))
+ (build-system asdf-build-system/sbcl)
+ (arguments
+ `(#:tests? #f ; Need to fix tests.
+ #:asd-files '("qc.asd")))
+ (native-inputs
+ (list sbcl-1am))
+ (inputs
+ (list sbcl-alexandria
+ sbcl-split-sequence))
+ (home-page "https://git.genenetwork.org/jgart/qc/")
+ (synopsis "Quality control of delimited files")
+ (description
+"@code{cl-qc} is a Common Lisp library for linting the following in
+delimited text files:
+@itemize
+@item Whitespace
+@item Floating-point number well-formedness
+@item GeneChip Platform ID checks for Affymetrix, Illumina, and others
+@end itemize\n")
+ (license license:llgpl))))
+
+(define-public cl-qc
+ (sbcl-package->cl-source-package sbcl-qc))
+
+(define-public ecl-qc
+ (sbcl-package->ecl-package sbcl-qc))
+
+