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authorAlexander2022-04-11 16:02:52 +0300
committerArun Isaac2022-04-12 15:42:46 +0530
commit58162946158199f01ac177e48b543a493e59fe16 (patch)
tree158f69d4dd1e876c1c73b3d1b2632bfa899974f2 /gn/packages
parentc8d34d1325ca18055cf17ec0421c389fd4e378e9 (diff)
downloadguix-bioinformatics-58162946158199f01ac177e48b543a493e59fe16.tar.gz
gn: python-rpy2-next: Remove package.
python-rpy2@3.4.5 has been upstreamed. * gn/packages/python.scm (python-rpy2-next): Delete variable. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Replace python-rpy2-next with python-rpy2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/genenetwork.scm2
-rw-r--r--gn/packages/python.scm12
2 files changed, 1 insertions, 13 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 6d58f37..a653ab4 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -231,7 +231,7 @@
("python-rdflib" ,python-rdflib)
("python-twint" ,python-twint)
;; TODO: Get rid of Python R bindings
- ("python-rpy2" ,python-rpy2-next)
+ ("python-rpy2" ,python-rpy2)
("python-beautifulsoup4" ,python-beautifulsoup4)
;; Disable for now. Build fails on Penguin2
;; ("python-flask-socketio" ,python-flask-socketio)
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 3f9a847..a689b1c 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -1612,18 +1612,6 @@ sorted order.")
(description "Python IPFS HTTP CLIENT library")
(license license:expat)))
-(define-public python-rpy2-next
- (package
- (inherit python-rpy2)
- (name "python-rpy2-next")
- (version "3.4.5")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "rpy2" version))
- (sha256
- (base32
- "1cysswxr5glrdblyl2zsmywcj7xhxn3wmyihxinrz9gm8gmaacax"))))))
(define-public python-jupyter-server-proxy
(package