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authorjgart2022-04-06 11:47:42 -0400
committerjgart2022-04-06 11:54:52 -0400
commit0f9ab7d8d63241fb99d5823ee3f0112246eda00e (patch)
tree125533409883a6e06ec11cdf0af7c1fc60af3479 /gn/packages
parentb030b089f26f31ff06aa14788820a2b9a25e85b7 (diff)
downloadguix-bioinformatics-0f9ab7d8d63241fb99d5823ee3f0112246eda00e.tar.gz
quality-control: add WIP sbcl-qc-uploads package
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/quality-control.scm46
1 files changed, 46 insertions, 0 deletions
diff --git a/gn/packages/quality-control.scm b/gn/packages/quality-control.scm
index dd3c779..884a7b9 100644
--- a/gn/packages/quality-control.scm
+++ b/gn/packages/quality-control.scm
@@ -79,3 +79,49 @@ delimited text files:
(sbcl-package->ecl-package sbcl-qc))
+;; The file
+;; #P"/tmp/guix-build-sbcl-qc-uploads-20220301-0.76f870e.drv-0/source/strains.csv"
+;; does not exist:
+;; No such file or directory
+#;(define-public sbcl-qc-uploads
+ (let ((commit "76f870efad964bf680bf633e272094082008e69c")
+ (revision "0"))
+ (package
+ (name "sbcl-qc-uploads")
+ (version (git-version "20220301" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://git.genenetwork.org/jgart/qc-uploads")
+ (commit commit)))
+ (sha256
+ (base32 "1nzcdqjwh1xpr92d01fvlmdysxizyklaid10zrxbi12jmdydapil"))
+ (file-name (git-file-name name commit))))
+ (build-system asdf-build-system/sbcl)
+ ;; needs install-file for strains.tsv. This require more testing.
+ ;; todo: see for an example: https://github.com/interactive-ssr/issr-server/blob/master/guix.scm#L46
+ (arguments
+ `(#:tests? #f ; There are no tests yet.
+ #:asd-files '("qc-uploads.asd")))
+ (inputs
+ (list sbcl-alexandria
+ sbcl-ningle
+ sbcl-clack
+ sbcl-cl-css
+ sbcl-cl-who
+ sbcl-cl-fad
+ sbcl-qc ; packaged in guix-bioinformatics
+ sbcl-woo))
+ (home-page "https://git.genenetwork.org/jgart/qc-uploads/")
+ (synopsis "Web UI for qc")
+ (description
+"@code{qc-uploads} provides a web UI for @code{qc}.")
+ (license license:expat))))
+
+#;(define-public cl-qc-uploads
+ (sbcl-package->cl-source-package sbcl-qc-uploads))
+
+#;(define-public ecl-qc-uploads
+ (sbcl-package->ecl-package sbcl-qc-uploads))
+