guix-bioinformatics - Bioinformatics packages for GNU Guix

Age	Commit message (Expand)	Author
3 hours	Allow for tuning of C++ and Rust packages --tune=native HEAD main	pjotrp
6 hours	Make these pangenome packages tunable	pjotrp
10 hours	New package (pangenomes) meta-package	pjotrp
33 hours	Rename channels.scm to avoid guix pull compilation error [AI]	pjotrp
2 days	Propagate snakemake (cosigt)	pjotrp
2 days	Fix cosigt propagation for workflow and missing getopts in pggb	pjotrp
2 days	Example (channels.scm)	pjotrp
5 days	Add test (impg) integration test	pjotrp
6 days	Propagate fastga-rs in impg	pjotrp
6 days	Add genecup to manifest	pjotrp
6 days	Add manifest.scm to build all critical packages	pjotrp
6 days	Downgraded (wfmash) from 0.24 to 0.14. Pggb requires that. Cosigt tests:	pjotrp
6 days	Update tests so they pass for cosigt	pjotrp
7 days	Add wfmash recent	pjotrp
7 days	Get pangenome tools going again	pjotrp
7 days	Working on cosigt and odgi (WIP)	pjotrp
8 days	Enable tests (impg)	pjotrp
8 days	Getting rid of guix-past dependency	pjotrp
8 days	Getting rid of guix-past dependency	pjotrp
8 days	Getting rid of guix-past dependency	pjotrp
8 days	Get rid of python-nose warning	pjotrp
8 days	Updated (impg) to latest with dependencies	pjotrp
8 days	Remove guix-rust-past from default channel	pjotrp
8 days	Milestone achieved: guix-bioinformatics no longer depends on guix-rust-past-c...	pjotrp
8 days	More surgery:	pjotrp
8 days	Updated rust package for qtlreaper	pjotrp
8 days	Move (gfaffix) to rust package	pjotrp
8 days	Changed URLs for Chris packages	pjotrp
8 days	Updated (gfautil) to latest rust packaging	pjotrp
8 days	Moved all pangenome Rust packages to pangenome-rust.scm	pjotrp
8 days	Added a number of packages for cosigt/impg:	pjotrp
2026-03-26	README - update on channels	pjotrp
2026-03-25	Cleanup in root folder pjotrp-w-claude	pjotrp
2026-03-25	Updated guix channel	pjotrp
2026-03-25	Updated README	pjotrp
2026-03-24	Fixes after a recent guix pull	pjotrp
2026-03-24	pylmm-gn2 moved to past	pjotrp
2026-03-23	Packages reintroduced for GN	pjotrp
2026-03-23	Moving failing packages out	pjotrp
2026-03-23	Fixes to build	pjotrp
2026-03-22	Fix (julia) packages by disabling tests (sorry)	pjotrp
2026-03-22	Fixed (node) by removing dev dependencies before install	pjotrp
2026-03-22	Drop unused GN and lizardfs packages	pjotrp
2026-03-22	Fixes builds	pjotrp
2026-03-22	fix (genenetwork2) build.	pjotrp
2026-03-22	Moving to guix-bioinformatics-past	pjotrp
2026-03-22	move patches	pjotrp
2026-03-22	Removed (delly)	pjotrp
2026-03-22	Mark RISC-V packages as obsolete	pjotrp
2026-03-22	Continue cleanup	pjotrp