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| author | pjotrp | 2026-03-23 08:48:26 +0100 |
|---|---|---|
| committer | pjotrp | 2026-03-23 08:48:26 +0100 |
| commit | 63bf0db41159b613bbcf96646e496b417897da1e (patch) | |
| tree | eb5cd51b14e3db3688517e7c41fa902e2358a40c | |
| parent | 927ebfe9ed380f07520b8039fe4d1837baac1cf7 (diff) | |
| download | guix-bioinformatics-63bf0db41159b613bbcf96646e496b417897da1e.tar.gz | |
Fixes to build
| -rw-r--r-- | gn/packages/bioinformatics.scm | 3 | ||||
| -rw-r--r-- | gn/packages/file-systems.scm | 1 | ||||
| -rw-r--r-- | gn/packages/maths.scm | 4 |
3 files changed, 8 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index af7724d..6688084 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -221,6 +221,8 @@ Canu's consensus module.") (substitute* "makefile" (("-Icxxopts/include") (string-append "-I" cxxopts)) (("-Iconcurrentqueue") (string-append "-I" concurrentqueue)) + ;; Fix missing cstdint with newer GCC. + (("CPPFLAGS=") "CPPFLAGS=-include cstdint ") ;; No need to build statically. (("-Wl,-Bstatic") "") (("-static-libstdc\\+\\+") ""))))) @@ -545,6 +547,7 @@ format.") (build-system gnu-build-system) (arguments (list #:tests? #f + #:make-flags #~(list "CXXFLAGS=-include linux/types.h") #:phases #~(modify-phases %standard-phases (delete 'configure) diff --git a/gn/packages/file-systems.scm b/gn/packages/file-systems.scm index 9c5cd04..dbf79c3 100644 --- a/gn/packages/file-systems.scm +++ b/gn/packages/file-systems.scm @@ -5,6 +5,7 @@ #:use-module (guix build-system gnu) #:use-module (gnu packages autotools) #:use-module (gnu packages compression) + #:use-module (gnu packages admin) #:use-module (gnu packages linux) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python)) diff --git a/gn/packages/maths.scm b/gn/packages/maths.scm index acbf69d..865e053 100644 --- a/gn/packages/maths.scm +++ b/gn/packages/maths.scm @@ -99,6 +99,7 @@ ((#:tests? _ #t) #f) ((#:phases phases #~%standard-phases) #~(modify-phases #$phases + (delete 'move-static-library) (add-after 'install 'remove-extra-files (lambda _ (delete-file-recursively (string-append #$output "/bin")) @@ -124,6 +125,7 @@ ((#:tests? _ #t) #f) ((#:phases phases #~%standard-phases) #~(modify-phases #$phases + (delete 'move-static-library) (add-after 'install 'remove-extra-files (lambda _ (delete-file-recursively (string-append #$output "/bin")) @@ -150,6 +152,7 @@ ((#:tests? _ #t) #f) ((#:phases phases #~%standard-phases) #~(modify-phases #$phases + (delete 'move-static-library) (add-after 'install 'remove-extra-files (lambda _ (delete-file-recursively (string-append #$output "/bin")) @@ -167,6 +170,7 @@ (substitute-keyword-arguments (package-arguments gsl) ((#:phases phases #~%standard-phases) #~(modify-phases #$phases + (delete 'move-static-library) (add-after 'install 'install-optimized-libraries (lambda* (#:key inputs outputs #:allow-other-keys) (let ((hwcaps "/lib/glibc-hwcaps")) |