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guix-bioinformatics
this commit
core-updates
cwl-talk
dennis
discourse-ruby-packages
elixir
fixup-guix-pull
fred
fredmanglis/production-container
gh-77990bdc/20/fredmanglis/master
gh-e9a93584/15/Brainiarc7/patch-3
gn-deploy
gn-dev
gn-latest
gn-latest-20190213
gn-latest-20190905
gn-phewas
gn-stable
gn-staging
gn1
gn2
guix-20170820-e904de7ec1789e243e830b19187b5ef550b2eefa
jupyter
ldc-wip
main
old-master
pjotrp-w-claude
stable
temporary2025-04-22
testing
update-gn3-for-production-container
wip-braker
wip-kaleido
wip-mailman
wip-ratspub
wip-ratspub-container
wip-tensorflow
Bioinformatics packages for GNU Guix
about
summary
refs
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Commit message (
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Author
11 days
Merge
HEAD
main
Pjotr Prins
13 days
gemma-wrapper: update
pjotr
13 days
Pangenome fixes
pjotr
13 days
Propagate tools in gemma-wrapper
pjotr
2026-05-29
needed /lib64 on ubuntu. Weird
Pjotr
2026-05-29
docker
pjotr
2026-05-29
Summary of the refactor:
pjotr
2026-05-29
Create pangenome singularity package
pjotr
2026-05-29
Create pangenome singularity package
pjotr
2026-05-29
Comments
pjotr
2026-05-29
Added tests [AI]
pjotr
2026-05-29
Added impop and dependencies
pjotr
2026-05-29
Final state of changes:
pjotr
2026-05-29
Summary:
pjotr
2026-05-18
Move headscale package out
pjotrp
2026-05-10
Added impop and dependencies
pjotr
2026-05-07
Final state of changes:
pjotr
2026-05-07
Summary:
pjotr
2026-05-02
mempang-workshop: Add gawk and which to propagated-inputs
wrk
2026-05-02
mbg: Unbundle recursive git submodule and use system parallel-hashmap
wrk
2026-05-02
Unbundling recursive git submodules
wrk
2026-04-25
Fix tests
pjotrp
2026-04-24
Added (networking) headscale package
pjotrp
2026-04-20
Fix path
pjotrp
2026-04-19
README
pjotrp
2026-04-19
The guix-bioinformatics README.org now has a comprehensive overview with thre...
pjotrp
2026-04-19
Add (pangenome) agc package
pjotrp
2026-04-18
Downgrade to wfmash-0.14 for mempang and add tools for the workshop
pjotrp
2026-04-17
Moving patches around so we can use loadpath again
pjotrp
2026-04-17
Patch (opensmtp) because it fails on sendmail -t
pjotrp
2026-04-17
● All part1.md tutorial steps reproduce successfully:
pjotrp
2026-04-17
- cigzip (binary, 0.1.0-b7cc0ed) -- successfully packaged and added to pang...
pjotrp
2026-04-16
● All 29 packages in manifest.scm.example built successfully! No failures.
pjotrp
2026-04-16
Added (pangenomes) rtg-tools
pjotrp
2026-04-16
Add (pangenomes) gfalook
pjotrp
2026-04-16
Added (pangenome) pafplot
pjotrp
2026-04-16
Adding packages for the mempang workshop
pjotrp
2026-04-15
Mempang25 workshop
pjotrp
2026-04-15
Added bandageNG
pjotrp
2026-04-15
Added vg package back in
pjotrp
2026-04-15
Allow tuning rust packages
pjotrp
2026-04-15
Re-add vcflib package
pjotrp
2026-04-13
README: add --tune=native switch
pjotrp
2026-04-11
pangenome: impg: updated to latest commit
pjotrp
2026-04-11
Make tools tunable (pangenome)
pjotrp
2026-04-10
Allow for tuning of C++ and Rust packages --tune=native
pjotrp
2026-04-10
Make these pangenome packages tunable
pjotrp
2026-04-10
New package (pangenomes) meta-package
pjotrp
2026-04-09
Rename channels.scm to avoid guix pull compilation error [AI]
pjotrp
2026-04-08
Propagate snakemake (cosigt)
pjotrp
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