diff options
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 356 | ||||
| -rw-r--r-- | gn/packages/check.scm | 53 | ||||
| -rw-r--r-- | gn/packages/file-systems.scm | 31 | ||||
| -rw-r--r-- | gn/packages/jupyterhub.scm | 2 | ||||
| -rw-r--r-- | gn/packages/machine-learning.scm | 2 | ||||
| -rw-r--r-- | gn/packages/python.scm | 30 | ||||
| -rw-r--r-- | gn/packages/rust-crates.scm | 525 | ||||
| -rw-r--r-- | gn/packages/twint.scm | 44 | ||||
| -rw-r--r-- | gn/packages/virtualization.scm | 1 |
9 files changed, 1009 insertions, 35 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index fb2ee18..7cf1398 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -15,6 +15,7 @@ #:use-module (guix build-system gnu) #:use-module (guix build-system meson) #:use-module (guix build-system ocaml) + #:use-module (guix build-system pyproject) #:use-module (guix build-system python) #:use-module (guix build-system r) #:use-module (guix build-system trivial) @@ -573,7 +574,7 @@ reads.") (define-public gfaffix (package (name "gfaffix") - (version "0.1.5") + (version "0.2.1") (source (origin (method git-fetch) @@ -582,20 +583,12 @@ reads.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "181jxl8ldj39jgscyqzhz4l4k5kxj1j9hvzi8dxj59h2zzznb0kb")))) + (base32 "0yn8i70ww3x544qm4fwr33vklsxf3fvivpfpv46prkfz9hsmd9ps")))) (build-system cargo-build-system) (arguments - `(#:install-source? #f - #:cargo-inputs - (("rust-clap" ,rust-clap-3) - ("rust-rustc-hash" ,rust-rustc-hash-1) - ("rust-regex" ,rust-regex-1) - ("rust-handlegraph" ,rust-handlegraph-0.7.0-alpha.9) - ("rust-gfa" ,rust-gfa-0.10) - ("rust-quick-csv", rust-quick-csv-0.1) - ("rust-rayon" ,rust-rayon-1) - ("rust-log" ,rust-log-0.4) - ("rust-env-logger" ,rust-env-logger-0.7)))) + `(#:install-source? #f)) + (inputs (cargo-inputs 'gfaffix + #:module '(gn packages rust-crates))) (home-page "https://github.com/marschall-lab/GFAffix") (synopsis "Identify walk-preserving shared affixes in variation graphs") (description @@ -1814,14 +1807,14 @@ dictionaries to record a queryable version of the graph.") (define-public smoothxg (package (name "smoothxg") - (version "0.8.0") + (version "0.8.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/pangenome/smoothxg" "/releases/download/v" version "/smoothxg-v" version ".tar.gz")) (sha256 - (base32 "1gl4dskj81hlma7wsjrwwg77hgzk7dc9iaqqnf2wzrf2f4ll1cdj")) + (base32 "1hqaa6l904zl01rsmw5vzx2kvcncl97i5kln850snywyv33skxp6")) (snippet #~(begin (use-modules (guix build utils)) @@ -1968,27 +1961,15 @@ here}.") (define-public mummer (package (name "mummer") - (version "4.0.0rc1") + (version "4.0.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/mummer4/mummer/releases/" "download/v" version "/mummer-" version ".tar.gz")) (sha256 - (base32 "07bxw1vax1sai3g5xjn6sqngddlbnlabpqy373vw4fb55pdnl045")))) + (base32 "0gix9qay0bcv515q9xag9arhq3wal77vf5g5whiy7cm004ksw85w")))) (build-system gnu-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - (add-after 'configure 'skip-test_md5-tests - (lambda _ - ;; There seems to be a bug with how these tests are called. - (substitute* "Makefile" - (("tests/mummer.sh") "") - (("tests/nucmer.sh") "") - (("tests/genome.sh") "") - (("tests/sam.sh") ""))))))) (inputs (list gnuplot perl)) @@ -2338,6 +2319,138 @@ in-memory footprint at the cost of packing and unpacking.") odgi-x86-64-v4))) (properties `((tunable? . #f))))) +(define-public vcflib + (package + (name "vcflib") + (version "1.0.12") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/vcflib/vcflib") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1llqnbgx4ybb77cp5k3cs0y7n4p8ma6b3sj10iarpg5r6a5gps5a")) + (modules '((guix build utils))) + (snippet + #~(begin + (substitute* "CMakeLists.txt" + ((".*fastahack.*") "") + ((".*smithwaterman.*") "") + (("(pkg_check_modules\\(TABIXPP)" text) + (string-append + "pkg_check_modules(WFA2 REQUIRED libwfa2)\n" + "pkg_check_modules(FASTAHACK REQUIRED fastahack)\n" + "pkg_check_modules(SMITHWATERMAN REQUIRED smithwaterman)\n" + text)) + (("\\$\\{TABIXPP_LIBRARIES\\}" text) + (string-append "${FASTAHACK_LIBRARIES} " + "${WFA2_LIBRARIES} " + "${SMITHWATERMAN_LIBRARIES} " + text)) + (("install\\(TARGETS \\$\\{WFALIB\\}.*") "")) + (substitute* (find-files "." "\\.(h|c)(pp)?$") + (("SmithWatermanGotoh.h") "smithwaterman/SmithWatermanGotoh.h") + (("\"convert.h\"") "<smithwaterman/convert.h>") + (("\"disorder.h\"") "<smithwaterman/disorder.h>") + (("\"wavefront/wfa.hpp\"") "<wavefront/wfa.hpp>") + (("Fasta.h") "fastahack/Fasta.h")))))) + (build-system cmake-build-system) + (inputs + (list bzip2 + curl + htslib + fastahack + perl + python + pybind11 + smithwaterman + tabixpp + xz + zlib)) + (propagated-inputs + (list wfa2-lib)) + (native-inputs + `(("pkg-config" ,pkg-config) + ;; Submodules. + ;; This package builds against the .o files so we need to extract the source. + ("filevercmp-src" ,(package-source filevercmp)) + ("fsom-src" ,(package-source fsom)) + ("intervaltree-src" ,(package-source intervaltree)))) + (arguments + (list + #:configure-flags + #~(list "-DZIG=OFF" + "-DTABIXPP_LOCAL=OFF" + "-DTABIX_FOUND=ON" + "-DWFA_GITMODULE=OFF") + #:tests? #f ; no tests + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'find-wfa2lib-headers + (lambda _ + (setenv "CPLUS_INCLUDE_PATH" + (string-append + #$(this-package-input "wfa2-lib") + "/include/wfa2lib:" + (or (getenv "CPLUS_INCLUDE_PATH") ""))))) + (add-after 'unpack 'build-shared-library + (lambda _ + (substitute* "CMakeLists.txt" + (("vcflib STATIC") "vcflib SHARED")))) + (add-after 'unpack 'unpack-submodule-sources + (lambda* (#:key inputs native-inputs #:allow-other-keys) + (let ((unpack (lambda (source target) + (mkdir-p target) + (with-directory-excursion target + (let ((source (or (assoc-ref inputs source) + (assoc-ref native-inputs source)))) + (if (file-is-directory? source) + (copy-recursively source ".") + (invoke "tar" "xvf" + source + "--strip-components=1"))))))) + (and + (unpack "filevercmp-src" "contrib/filevercmp") + (unpack "fsom-src" "contrib/fsom") + (unpack "intervaltree-src" "contrib/intervaltree")) + + ;; This is needed for downstream packages to allow building + ;; with GCC 11+. + (substitute* "contrib/intervaltree/IntervalTree.h" + (("#include <vector>" m) + (string-append m " +#include <limits> /* std::numeric_limits */")))))) + ;; This pkg-config file is provided by other distributions. + (add-after 'install 'install-pkg-config-file + (lambda _ + (let ((pkgconfig (string-append #$output "/lib/pkgconfig"))) + (mkdir-p pkgconfig) + (with-output-to-file (string-append pkgconfig "/vcflib.pc") + (lambda _ + (format #t "\ +prefix=~a~@ +exec_prefix=${prefix}~@ +libdir=${exec_prefix}/lib~@ +includedir=${prefix}/include~@ +~@ +Name: vcflib~@ +Version: ~a~@ +Requires: libwfa2, smithwaterman, fastahack, tabixpp~@ +Description: C++ library for parsing and manipulating VCF files~@ +Libs: -L${libdir} -lvcflib~@ +Cflags: -I${includedir}~%" + #$output #$version))))))))) + (home-page "https://github.com/vcflib/vcflib/") + (synopsis "Library for parsing and manipulating VCF files") + (description "Vcflib provides methods to manipulate and interpret +sequence variation as it can be described by VCF. It is both an API for parsing +and operating on records of genomic variation as it can be described by the VCF +format, and a collection of command-line utilities for executing complex +manipulations on VCF files.") + (license license:expat))) + (define-public vg (package (name "vg") @@ -4785,3 +4898,188 @@ reads, and it is one of the best haplotype-resolved assemblers for the trio-binning assembly given parental short reads. For a human genome, hifiasm can produce the telomere-to-telomere assembly in one day.") (license license:expat))) + +(define-public parasail + (package + (name "parasail") + (version "2.6.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jeffdaily/parasail") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0pnw8x266b4qggv9hn4sng9z6zcq0rg7h6slcq3ka3snybzn61r8")))) + (build-system gnu-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'patch-tests + (lambda _ + (substitute* "tests/test_verify_traces.c" + (("ref_trace_table = parasail") + "ref_trace_table = (int8_t*)parasail") + ((", trace_table,") + ", (int8_t*)trace_table,"))))))) + (native-inputs + (list autoconf + automake + libtool)) + (home-page "https://github.com/jeffdaily/parasail") + (synopsis "Pairwise sequence alignment library") + (description "parasail is a SIMD C (C99) library containing +implementations of the Smith-Waterman (local), +Needleman-Wunsch (global), and various semi-global pairwise sequence +alignment algorithms. Here, semi-global means insertions before the +start or after the end of either the query or target sequence are +optionally not penalized. parasail implements most known algorithms +for vectorized pairwise sequence alignment, including diagonal +[Wozniak, 1997], blocked [Rognes and Seeberg, 2000], striped [Farrar, +2007], and prefix scan [Daily, 2015]. Therefore, parasail is a +reference implementation for these algorithms in addition to providing +an implementation of the best-performing algorithm(s) to date on +today's most advanced CPUs.") + (license license:bsd-2))) + +(define-public python-parasail + (package + (name "python-parasail") + (version "1.3.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "parasail" version)) + (sha256 + (base32 "03qvnswvzv6pv5lzlnd05rbjphhl29qiasbyvnpmmvz3z9fh79yn")))) + (build-system pyproject-build-system) + (arguments + (list #:test-backend #~'unittest + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'insert-libparasail + (lambda* (#:key inputs #:allow-other-keys) + (copy-file (search-input-file inputs "/lib/libparasail.so") + "parasail/libparasail.so")))))) + (inputs + (list parasail)) + (native-inputs + (list python-setuptools python-wheel)) + (propagated-inputs + (list python-numpy)) + (home-page "https://github.com/jeffdaily/parasail-python") + (synopsis "Parasail Python bindings") + (description "This package provides Python bindings for the +parasail C library.") + (license license:bsd-2))) + +(define-public liftoff + (package + (name "liftoff") + (version "1.6.3") + (source + ;; The PyPI tarball is missing the tests. + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/agshumate/Liftoff") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "18840vdv75nsq0fw5hzvrp7l0k6ciamlzkhgxxhnjh23ghih71dx")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'relax-version-requirements + (lambda _ + (substitute* "setup.py" + (("==") ">="))))))) + (inputs + (list python-biopython + python-gffutils + python-interlap + python-networkx + python-numpy + python-parasail + python-pyfaidx + python-pysam + python-ujson)) + (native-inputs + (list minimap2 + python-pytest + python-setuptools + python-wheel)) + (home-page "https://github.com/ashumate/Liftoff") + (synopsis "GFF3/GTF lift over pipeline") + (description "Liftoff is a tool that accurately maps annotations +in GFF or GTF between assemblies of the same, or closely-related +species. Unlike current coordinate lift-over tools which require a +pre-generated “chain” file as input, Liftoff is a standalone tool that +takes two genome assemblies and a reference annotation as input and +outputs an annotation of the target genome. Liftoff uses minimap2 to +align the gene sequences from a reference genome to the target genome. +Rather than aligning whole genomes, aligning only the gene sequences +allows genes to be lifted over even if there are many structural +differences between the two genomes. For each gene, Liftoff finds the +alignments of the exons that maximize sequence identity while +preserving the transcript and gene structure. If two genes incorrectly +map to overlapping loci, Liftoff determines which gene is most-likely +mis-mapped, and attempts to re-map it. Liftoff can also find +additional gene copies present in the target assembly that are not +annotated in the reference.") + (license license:gpl3+))) + +(define-public r-gggenes + (package + (name "r-gggenes") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "gggenes" version)) + (sha256 + (base32 "0400qhppx8kg70f6bbya3k6lhdgjj3dllgfgg6s509kbp5qsjbcd")))) + (properties `((upstream-name . "gggenes"))) + (build-system r-build-system) + (propagated-inputs (list r-cli r-ggfittext r-ggplot2 r-lifecycle r-rlang)) + (native-inputs (list r-knitr r-spelling r-testthat)) + (home-page "https://wilkox.org/gggenes/") + (synopsis "Draw Gene Arrow Maps in 'ggplot2'") + (description + "This package provides a ggplot2 extension for drawing gene arrow maps.") + (license gpl2))) + + +(define-public r-dendextend + (package + (name "r-dendextend") + (version "1.19.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "dendextend" version)) + (sha256 + (base32 "0097bmdv960khjkf3gvbdrazx4ns8i9221m9h68vnq541h61ag5y")))) + (properties `((upstream-name . "dendextend"))) + (build-system r-build-system) + (propagated-inputs (list r-ggplot2 r-magrittr r-viridis)) + (native-inputs (list r-ape + r-cluster + r-data-table + r-dendextendrcpp + r-fpc + r-knitr + r-pvclust + r-testthat)) + (home-page "https://talgalili.github.io/dendextend/") + (synopsis "Extending 'dendrogram' Functionality in R") + (description + "Offers a set of functions for extending dendrogram objects in R, letting you +visualize and compare trees of hierarchical clusterings'. You can (1) Adjust a +tree's graphical parameters - the color, size, type, etc of its branches, nodes +and labels. (2) Visually and statistically compare different dendrograms to one +another.") + (license (list gpl2 gpl3)))) diff --git a/gn/packages/check.scm b/gn/packages/check.scm index 960e78e..01f1508 100644 --- a/gn/packages/check.scm +++ b/gn/packages/check.scm @@ -1,9 +1,12 @@ (define-module (gn packages check) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix build-system pyproject) #:use-module (guix build-system python) #:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages check) + #:use-module (gnu packages python-build) + #:use-module (gnu packages python-check) #:use-module (gnu packages python-xyz) #:use-module (past packages python27)) @@ -30,6 +33,34 @@ It will honor all the options you pass to the Nose coverage plugin, especially -cover-package.") (license license:expat))) +(define-public python-traceback2 + (package + (name "python-traceback2") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "traceback2" version)) + (sha256 + (base32 + "0c1h3jas1jp1fdbn9z2mrgn3jj0hw1x3yhnkxp7jw34q15xcdb05")))) + (build-system python-build-system) + (arguments + `(;; python-traceback2 and python-unittest2 depend on one another. + #:tests? #f)) + (native-inputs + (list python-pbr)) + (propagated-inputs + (list python-linecache2 python-six)) + (home-page + "https://github.com/testing-cabal/traceback2") + (synopsis "Backports of the traceback module") + (description + "This module provides a standard interface to extract, format and print +stack traces of Python programs. It exactly mimics the behavior of the Python +interpreter when it prints a stack trace.") + (license license:psfl))) + (define-public python-unittest2 (package (name "python-unittest2") @@ -59,3 +90,25 @@ especially -cover-package.") "Unittest2 is a replacement for the unittest module in the Python standard library.") (license license:psfl))) + +(define-public python-pyux + (package + (name "python-pyux") + (version "0.0.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyux" version)) + (sha256 + (base32 + "1i17xh4dy238ibrjdgh8vn78fk5q6dj37mcznpvdfzidj57js7ca")))) + (build-system pyproject-build-system) + (arguments + `(#:tests? #f)) ;the mini test suite fails + (native-inputs + (list python-pytest python-setuptools)) + (home-page "https://github.com/farizrahman4u/pyux") + (synopsis "Utility to check API integrity in Python libraries") + (description "The pyux utility detects API changes in Python +libraries.") + (license license:expat))) diff --git a/gn/packages/file-systems.scm b/gn/packages/file-systems.scm index bf92ed9..1610a76 100644 --- a/gn/packages/file-systems.scm +++ b/gn/packages/file-systems.scm @@ -5,6 +5,10 @@ #:use-module (guix git-download) #:use-module (guix utils) #:use-module (guix build-system cmake) + #:use-module (guix build-system gnu) + #:use-module (gnu packages admin) + #:use-module (gnu packages autotools) + #:use-module (gnu packages base) #:use-module (gnu packages boost) #:use-module (gnu packages check) #:use-module (gnu packages compression) @@ -15,6 +19,33 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages python)) +(define-public moosefs + (package + (name "moosefs") + (version "4.58.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/moosefs/moosefs") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "163x7ziamqy79xaiy5fhr8afbj65ssnyqki5v6wxanciwczw4jcl")))) + (build-system gnu-build-system) + (inputs + (list + autoconf automake fuse libpcap zlib python libtool)) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://moosefs.com/") + (synopsis "Distributed, scalable, fault-tolerant, highly available file system") + (description + "MooseFS is a Petabyte Open Source Network Distributed File System. It is easy to deploy and maintain, highly reliable, fault tolerant, highly performing, easily scalable and POSIX compliant.") + (license (list license:asl2.0 ; external/crcutil + license:gpl2+)))) + (define-public lizardfs (package (name "lizardfs") diff --git a/gn/packages/jupyterhub.scm b/gn/packages/jupyterhub.scm index 2779d3e..165bb8a 100644 --- a/gn/packages/jupyterhub.scm +++ b/gn/packages/jupyterhub.scm @@ -213,7 +213,7 @@ libraries into this environment without any specialized knowledge.") ("python-etcd3" ,python-etcd3) ("python-aiohttp" ,python-aiohttp) ("python-passlib" ,python-passlib) - ("python-consul" ,python-consul) + ("python-py-consul" ,python-py-consul) ("python-toml" ,python-toml) ("python-escapism" ,python-escapism))) (native-inputs diff --git a/gn/packages/machine-learning.scm b/gn/packages/machine-learning.scm index 541b3b6..d302150 100644 --- a/gn/packages/machine-learning.scm +++ b/gn/packages/machine-learning.scm @@ -5,10 +5,12 @@ #:use-module (gnu packages machine-learning) #:use-module (guix download) #:use-module (guix build-system python) + #:use-module (gn packages check) #:use-module (gnu packages python-xyz) #:use-module (gnu packages graphviz) #:use-module (gnu packages python-science) #:use-module (gnu packages check) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) #:use-module (gnu packages sphinx) #:use-module (gnu packages python-web) diff --git a/gn/packages/python.scm b/gn/packages/python.scm index e429058..2b25775 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -870,16 +870,36 @@ spreadsheets without the need for COM objects.") (description "Extensions to the standard Python datetime module") (license license:bsd-3))) -(define-public python-pyshex +(define-public python-cfgraph (package - (name "python-pyshex") - (version "0.7.14") + (name "python-cfgraph") + (version "0.2.1") (source (origin (method url-fetch) - (uri (pypi-uri "PyShEx" version)) + (uri (pypi-uri "CFGraph" version)) (sha256 - (base32 "1fy664bh6hpmr4cf49fwwxng36kv7s6b2986hbv0cqcypc4ri2cs")))) + (base32 + "0x7yz0lvqb6mkhl5fbml27sppmscgpf8v2ism9jzzf0h982ffzxm")))) + (build-system python-build-system) + (propagated-inputs + (list python-rdflib)) + (home-page "https://github.com/hsolbrig/CFGraph") + (synopsis "RDF Collections flattener for rdflib") + (description + "This package contains RDF Collections flattener for @code{rdflib}.") + (license license:asl2.0))) + +(define-public python-pyshex + (package + (name "python-pyshex") + (version "0.7.14") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyShEx" version)) + (sha256 + (base32 "1fy664bh6hpmr4cf49fwwxng36kv7s6b2986hbv0cqcypc4ri2cs")))) (arguments '(#:tests? #f ; Tests try to use the internet. #:phases diff --git a/gn/packages/rust-crates.scm b/gn/packages/rust-crates.scm new file mode 100644 index 0000000..e9945aa --- /dev/null +++ b/gn/packages/rust-crates.scm @@ -0,0 +1,525 @@ +(define-module (gn packages rust-crates) + #:use-module (guix build-system cargo) + #:export (lookup-cargo-inputs)) + +(define rust-adler2-2.0.1 + (crate-source "adler2" "2.0.1" + "1ymy18s9hs7ya1pjc9864l30wk8p2qfqdi7mhhcc5nfakxbij09j")) + +(define rust-aho-corasick-1.1.4 + (crate-source "aho-corasick" "1.1.4" + "00a32wb2h07im3skkikc495jvncf62jl6s96vwc7bhi70h9imlyx")) + +(define rust-anstream-0.6.21 + (crate-source "anstream" "0.6.21" + "0jjgixms4qjj58dzr846h2s29p8w7ynwr9b9x6246m1pwy0v5ma3")) + +(define rust-anstyle-1.0.13 + (crate-source "anstyle" "1.0.13" + "0y2ynjqajpny6q0amvfzzgw0gfw3l47z85km4gvx87vg02lcr4ji")) + +(define rust-anstyle-parse-0.2.7 + (crate-source "anstyle-parse" "0.2.7" + "1hhmkkfr95d462b3zf6yl2vfzdqfy5726ya572wwg8ha9y148xjf")) + +(define rust-anstyle-query-1.1.5 + (crate-source "anstyle-query" "1.1.5" + "1p6shfpnbghs6jsa0vnqd8bb8gd7pjd0jr7w0j8jikakzmr8zi20")) + +(define rust-anstyle-wincon-3.0.11 + (crate-source "anstyle-wincon" "3.0.11" + "0zblannm70sk3xny337mz7c6d8q8i24vhbqi42ld8v7q1wjnl7i9")) + +(define rust-anyhow-1.0.101 + (crate-source "anyhow" "1.0.101" + "1skmg90fnjnlgs3vl7bksw7036d3rqwqj20n2fxd2ppg67p0y3jz")) + +(define rust-arrayvec-0.5.2 + (crate-source "arrayvec" "0.5.2" + "12q6hn01x5435bprwlb7w9m7817dyfq55yrl4psygr78bp32zdi3")) + +(define rust-autocfg-1.5.0 + (crate-source "autocfg" "1.5.0" + "1s77f98id9l4af4alklmzq46f21c980v13z2r1pcxx6bqgw0d1n0")) + +(define rust-bitflags-1.3.2 + (crate-source "bitflags" "1.3.2" + "12ki6w8gn1ldq7yz9y680llwk5gmrhrzszaa17g1sbrw2r2qvwxy")) + +(define rust-bitflags-2.11.0 + (crate-source "bitflags" "2.11.0" + "1bwjibwry5nfwsfm9kjg2dqx5n5nja9xymwbfl6svnn8jsz6ff44")) + +(define rust-boomphf-0.5.9 + (crate-source "boomphf" "0.5.9" + "0braniw72g9yq5006sfgc1g8d4317bb524c694jw6nggizrvg3sf")) + +(define rust-bstr-0.2.17 + (crate-source "bstr" "0.2.17" + "08rjbhysy6gg27db2h3pnhvr2mlr5vkj797i9625kwg8hgrnjdds")) + +(define rust-bytemuck-1.25.0 + (crate-source "bytemuck" "1.25.0" + "1v1z32igg9zq49phb3fra0ax5r2inf3aw473vldnm886sx5vdvy8")) + +(define rust-bytemuck-derive-1.10.2 + (crate-source "bytemuck_derive" "1.10.2" + "1zvmjmw1sdmx9znzm4dpbb2yvz9vyim8w6gp4z256l46qqdvvazr")) + +(define rust-byteorder-1.5.0 + (crate-source "byteorder" "1.5.0" + "0jzncxyf404mwqdbspihyzpkndfgda450l0893pz5xj685cg5l0z")) + +(define rust-cc-1.2.56 + (crate-source "cc" "1.2.56" + "1chvh9g2izhqad7vzy4cc7xpdljdvqpsr6x6hv1hmyqv3mlkbgxf")) + +(define rust-cfg-if-1.0.4 + (crate-source "cfg-if" "1.0.4" + "008q28ajc546z5p2hcwdnckmg0hia7rnx52fni04bwqkzyrghc4k")) + +(define rust-clap-4.5.59 + (crate-source "clap" "4.5.59" + "16b4kgj909yyshz9kj7nkalbyi46yz1lrhqha54wbbn32x6zgjn5")) + +(define rust-clap-builder-4.5.59 + (crate-source "clap_builder" "4.5.59" + "094fc76nsq3v52r1a9rbwix22cqnda8p2wr2a24j302v0r2sl39p")) + +(define rust-clap-derive-4.5.55 + (crate-source "clap_derive" "4.5.55" + "1r949xis3jmhzh387smd70vc8a3b9734ck3g5ahg59a63bd969x9")) + +(define rust-clap-lex-1.0.0 + (crate-source "clap_lex" "1.0.0" + "0c8888qi1l9sayqlv666h8s0yxn2qc6jr88v1zagk43mpjjjx0is")) + +(define rust-colorchoice-1.0.4 + (crate-source "colorchoice" "1.0.4" + "0x8ymkz1xr77rcj1cfanhf416pc4v681gmkc9dzb3jqja7f62nxh")) + +(define rust-crc32fast-1.5.0 + (crate-source "crc32fast" "1.5.0" + "04d51liy8rbssra92p0qnwjw8i9rm9c4m3bwy19wjamz1k4w30cl")) + +(define rust-crossbeam-channel-0.5.15 + (crate-source "crossbeam-channel" "0.5.15" + "1cicd9ins0fkpfgvz9vhz3m9rpkh6n8d3437c3wnfsdkd3wgif42")) + +(define rust-crossbeam-deque-0.8.6 + (crate-source "crossbeam-deque" "0.8.6" + "0l9f1saqp1gn5qy0rxvkmz4m6n7fc0b3dbm6q1r5pmgpnyvi3lcx")) + +(define rust-crossbeam-epoch-0.9.18 + (crate-source "crossbeam-epoch" "0.9.18" + "03j2np8llwf376m3fxqx859mgp9f83hj1w34153c7a9c7i5ar0jv")) + +(define rust-crossbeam-utils-0.8.21 + (crate-source "crossbeam-utils" "0.8.21" + "0a3aa2bmc8q35fb67432w16wvi54sfmb69rk9h5bhd18vw0c99fh")) + +(define rust-either-1.15.0 + (crate-source "either" "1.15.0" + "069p1fknsmzn9llaizh77kip0pqmcwpdsykv2x30xpjyija5gis8")) + +(define rust-env-filter-1.0.0 + (crate-source "env_filter" "1.0.0" + "13rhwy5arjn626a0z3hvvkpf9w9pnll14c35vscyqx3jwp43q73s")) + +(define rust-env-logger-0.11.9 + (crate-source "env_logger" "0.11.9" + "13913sqpnhv741z5ixmcy5j3nnml53gmsllnhajjkx2ili7fxnmj")) + +(define rust-equivalent-1.0.2 + (crate-source "equivalent" "1.0.2" + "03swzqznragy8n0x31lqc78g2af054jwivp7lkrbrc0khz74lyl7")) + +(define rust-errno-0.3.14 + (crate-source "errno" "0.3.14" + "1szgccmh8vgryqyadg8xd58mnwwicf39zmin3bsn63df2wbbgjir")) + +(define rust-find-msvc-tools-0.1.9 + (crate-source "find-msvc-tools" "0.1.9" + "10nmi0qdskq6l7zwxw5g56xny7hb624iki1c39d907qmfh3vrbjv")) + +(define rust-flate2-1.1.9 + (crate-source "flate2" "1.1.9" + "0g2pb7cxnzcbzrj8bw4v6gpqqp21aycmf6d84rzb6j748qkvlgw4")) + +(define rust-fnv-1.0.7 + (crate-source "fnv" "1.0.7" + "1hc2mcqha06aibcaza94vbi81j6pr9a1bbxrxjfhc91zin8yr7iz")) + +(define rust-gfa-0.10.1 + (crate-source "gfa" "0.10.1" + "1x996rpfnflgi2j4dgaj5sdxdbf24zfm9d2ha0zy8aid0cd60cln")) + +(define rust-handlegraph-0.7.0-alpha.9 + (crate-source "handlegraph" "0.7.0-alpha.9" + "1frlcdwhycjvizb0gfb0v36vxjdi0jxagl2l2v6dzdjxpaawv9rs")) + +(define rust-hashbrown-0.16.1 + (crate-source "hashbrown" "0.16.1" + "004i3njw38ji3bzdp9z178ba9x3k0c1pgy8x69pj7yfppv4iq7c4")) + +(define rust-heck-0.5.0 + (crate-source "heck" "0.5.0" + "1sjmpsdl8czyh9ywl3qcsfsq9a307dg4ni2vnlwgnzzqhc4y0113")) + +(define rust-indexmap-2.13.0 + (crate-source "indexmap" "2.13.0" + "05qh5c4h2hrnyypphxpwflk45syqbzvqsvvyxg43mp576w2ff53p")) + +(define rust-is-terminal-polyfill-1.70.2 + (crate-source "is_terminal_polyfill" "1.70.2" + "15anlc47sbz0jfs9q8fhwf0h3vs2w4imc030shdnq54sny5i7jx6")) + +(define rust-jiff-0.2.20 + (crate-source "jiff" "0.2.20" + "0hv59kcqj5sc0jgk4q7yrq5dp8yb3qlan98qk3s36sq9ribc6ry8")) + +(define rust-jiff-static-0.2.20 + (crate-source "jiff-static" "0.2.20" + "1rcvbp9aj8ll4ljxcgzq4l2h9idmkb0v6mdvf3r3i5r64m1np57p")) + +(define rust-lazy-static-1.5.0 + (crate-source "lazy_static" "1.5.0" + "1zk6dqqni0193xg6iijh7i3i44sryglwgvx20spdvwk3r6sbrlmv")) + +(define rust-lexical-core-0.7.6 + (crate-source "lexical-core" "0.7.6" + "1zjzab1fnaw4kj6ixyrskp4dyz761gdcab07m4bkvlk1l4mcc1v6")) + +(define rust-libc-0.2.182 + (crate-source "libc" "0.2.182" + "04k1w1mq9f4cxv520dbr5xw1i7xkbc9fcrvaggyjy25jdkdvl038")) + +(define rust-libz-sys-1.1.23 + ;; TODO: Check bundled sources. + (crate-source "libz-sys" "1.1.23" + "1xy0l46gmhfyk28r9pm7njl0h7dh8l2vpiqw67kn043pyfxiil8m")) + +(define rust-linux-raw-sys-0.11.0 + ;; TODO: Check bundled sources. + (crate-source "linux-raw-sys" "0.11.0" + "0fghx0nn8nvbz5yzgizfcwd6ap2pislp68j8c1bwyr6sacxkq7fz")) + +(define rust-log-0.4.29 + (crate-source "log" "0.4.29" + "15q8j9c8g5zpkcw0hnd6cf2z7fxqnvsjh3rw5mv5q10r83i34l2y")) + +(define rust-memchr-2.8.0 + (crate-source "memchr" "2.8.0" + "0y9zzxcqxvdqg6wyag7vc3h0blhdn7hkq164bxyx2vph8zs5ijpq")) + +(define rust-memmap-0.7.0 + (crate-source "memmap" "0.7.0" + "0ns7kkd1h4pijdkwfvw4qlbbmqmlmzwlq3g2676dcl5vwyazv1b5")) + +(define rust-miniz-oxide-0.8.9 + (crate-source "miniz_oxide" "0.8.9" + "05k3pdg8bjjzayq3rf0qhpirq9k37pxnasfn4arbs17phqn6m9qz")) + +(define rust-nom-5.1.3 + (crate-source "nom" "5.1.3" + "0jyxc4d3pih60pp8hvzpg5ajh16s273cpnsdpzp04qv7g8w9m588")) + +(define rust-num-traits-0.2.19 + (crate-source "num-traits" "0.2.19" + "0h984rhdkkqd4ny9cif7y2azl3xdfb7768hb9irhpsch4q3gq787")) + +(define rust-once-cell-polyfill-1.70.2 + (crate-source "once_cell_polyfill" "1.70.2" + "1zmla628f0sk3fhjdjqzgxhalr2xrfna958s632z65bjsfv8ljrq")) + +(define rust-pkg-config-0.3.32 + (crate-source "pkg-config" "0.3.32" + "0k4h3gnzs94sjb2ix6jyksacs52cf1fanpwsmlhjnwrdnp8dppby")) + +(define rust-portable-atomic-1.13.1 + (crate-source "portable-atomic" "1.13.1" + "0j8vlar3n5acyigq8q6f4wjx3k3s5yz0rlpqrv76j73gi5qr8fn3")) + +(define rust-portable-atomic-util-0.2.5 + (crate-source "portable-atomic-util" "0.2.5" + "1xcm0ia8756k6hdgafx4g3lx3fw0hvz2zqswq7c2sy58gxnvk7bs")) + +(define rust-proc-macro2-1.0.106 + (crate-source "proc-macro2" "1.0.106" + "0d09nczyaj67x4ihqr5p7gxbkz38gxhk4asc0k8q23g9n85hzl4g")) + +(define rust-quote-1.0.44 + (crate-source "quote" "1.0.44" + "1r7c7hxl66vz3q9qizgjhy77pdrrypqgk4ghc7260xvvfb7ypci1")) + +(define rust-rand-core-0.6.4 + (crate-source "rand_core" "0.6.4" + "0b4j2v4cb5krak1pv6kakv4sz6xcwbrmy2zckc32hsigbrwy82zc")) + +(define rust-rayon-1.11.0 + (crate-source "rayon" "1.11.0" + "13x5fxb7rn4j2yw0cr26n7782jkc7rjzmdkg42qxk3xz0p8033rn")) + +(define rust-rayon-core-1.13.0 + (crate-source "rayon-core" "1.13.0" + "14dbr0sq83a6lf1rfjq5xdpk5r6zgzvmzs5j6110vlv2007qpq92")) + +(define rust-regex-1.12.3 + (crate-source "regex" "1.12.3" + "0xp2q0x7ybmpa5zlgaz00p8zswcirj9h8nry3rxxsdwi9fhm81z1")) + +(define rust-regex-automata-0.1.10 + (crate-source "regex-automata" "0.1.10" + "0ci1hvbzhrfby5fdpf4ganhf7kla58acad9i1ff1p34dzdrhs8vc")) + +(define rust-regex-automata-0.4.14 + (crate-source "regex-automata" "0.4.14" + "13xf7hhn4qmgfh784llcp2kzrvljd13lb2b1ca0mwnf15w9d87bf")) + +(define rust-regex-syntax-0.8.9 + (crate-source "regex-syntax" "0.8.9" + "0k0a47r1rcl794wj8a948niakbg081s5pp5nlgcbmmr2iy3qfs59")) + +(define rust-rustc-hash-2.1.1 + (crate-source "rustc-hash" "2.1.1" + "03gz5lvd9ghcwsal022cgkq67dmimcgdjghfb5yb5d352ga06xrm")) + +(define rust-rustix-1.1.3 + (crate-source "rustix" "1.1.3" + "0d0z2zcw4rwzni1hm8snw8xdxwwrij336m31c4ghq66cghj9wv0l")) + +(define rust-ryu-1.0.23 + (crate-source "ryu" "1.0.23" + "0zs70sg00l2fb9jwrf6cbkdyscjs53anrvai2hf7npyyfi5blx4p")) + +(define rust-serde-core-1.0.228 + (crate-source "serde_core" "1.0.228" + "1bb7id2xwx8izq50098s5j2sqrrvk31jbbrjqygyan6ask3qbls1")) + +(define rust-serde-derive-1.0.228 + (crate-source "serde_derive" "1.0.228" + "0y8xm7fvmr2kjcd029g9fijpndh8csv5m20g4bd76w8qschg4h6m")) + +(define rust-shlex-1.3.0 + (crate-source "shlex" "1.3.0" + "0r1y6bv26c1scpxvhg2cabimrmwgbp4p3wy6syj9n0c4s3q2znhg")) + +(define rust-simd-adler32-0.3.8 + (crate-source "simd-adler32" "0.3.8" + "18lx2gdgislabbvlgw5q3j5ssrr77v8kmkrxaanp3liimp2sc873")) + +(define rust-static-assertions-1.1.0 + (crate-source "static_assertions" "1.1.0" + "0gsl6xmw10gvn3zs1rv99laj5ig7ylffnh71f9l34js4nr4r7sx2")) + +(define rust-strsim-0.11.1 + (crate-source "strsim" "0.11.1" + "0kzvqlw8hxqb7y598w1s0hxlnmi84sg5vsipp3yg5na5d1rvba3x")) + +(define rust-succinct-0.5.2 + (crate-source "succinct" "0.5.2" + "0654c9gq50x7djyf25zbzz3d2pc4x3z21wmjj3qbr6d9h4hbd63p")) + +(define rust-syn-2.0.116 + (crate-source "syn" "2.0.116" + "1jv9pk48qmhn6yrdfl3lngy5i74wg7gcx13gfhvm4s8q0p3j9x1x")) + +(define rust-terminal-size-0.4.3 + (crate-source "terminal_size" "0.4.3" + "1l7cicmz49c0cyskfp5a389rsai649xi7y032v73475ikjbwpf30")) + +(define rust-unicode-ident-1.0.24 + (crate-source "unicode-ident" "1.0.24" + "0xfs8y1g7syl2iykji8zk5hgfi5jw819f5zsrbaxmlzwsly33r76")) + +(define rust-utf8parse-0.2.2 + (crate-source "utf8parse" "0.2.2" + "088807qwjq46azicqwbhlmzwrbkz7l4hpw43sdkdyyk524vdxaq6")) + +(define rust-vcpkg-0.2.15 + (crate-source "vcpkg" "0.2.15" + "09i4nf5y8lig6xgj3f7fyrvzd3nlaw4znrihw8psidvv5yk4xkdc")) + +(define rust-version-check-0.9.5 + (crate-source "version_check" "0.9.5" + "0nhhi4i5x89gm911azqbn7avs9mdacw2i3vcz3cnmz3mv4rqz4hb")) + +(define rust-winapi-0.3.9 + (crate-source "winapi" "0.3.9" + "06gl025x418lchw1wxj64ycr7gha83m44cjr5sarhynd9xkrm0sw")) + +(define rust-winapi-i686-pc-windows-gnu-0.4.0 + (crate-source "winapi-i686-pc-windows-gnu" "0.4.0" + "1dmpa6mvcvzz16zg6d5vrfy4bxgg541wxrcip7cnshi06v38ffxc" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-winapi-x86-64-pc-windows-gnu-0.4.0 + (crate-source "winapi-x86_64-pc-windows-gnu" "0.4.0" + "0gqq64czqb64kskjryj8isp62m2sgvx25yyj3kpc2myh85w24bki" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-aarch64-gnullvm-0.53.1 + (crate-source "windows_aarch64_gnullvm" "0.53.1" + "0lqvdm510mka9w26vmga7hbkmrw9glzc90l4gya5qbxlm1pl3n59" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-aarch64-msvc-0.53.1 + (crate-source "windows_aarch64_msvc" "0.53.1" + "01jh2adlwx043rji888b22whx4bm8alrk3khjpik5xn20kl85mxr" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-i686-gnu-0.53.1 + (crate-source "windows_i686_gnu" "0.53.1" + "18wkcm82ldyg4figcsidzwbg1pqd49jpm98crfz0j7nqd6h6s3ln" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-i686-gnullvm-0.53.1 + (crate-source "windows_i686_gnullvm" "0.53.1" + "030qaxqc4salz6l4immfb6sykc6gmhyir9wzn2w8mxj8038mjwzs" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-i686-msvc-0.53.1 + (crate-source "windows_i686_msvc" "0.53.1" + "1hi6scw3mn2pbdl30ji5i4y8vvspb9b66l98kkz350pig58wfyhy" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-link-0.2.1 + (crate-source "windows-link" "0.2.1" + "1rag186yfr3xx7piv5rg8b6im2dwcf8zldiflvb22xbzwli5507h")) + +(define rust-windows-sys-0.60.2 + ;; TODO: Check bundled sources. + (crate-source "windows-sys" "0.60.2" + "1jrbc615ihqnhjhxplr2kw7rasrskv9wj3lr80hgfd42sbj01xgj")) + +(define rust-windows-sys-0.61.2 + ;; TODO: Check bundled sources. + (crate-source "windows-sys" "0.61.2" + "1z7k3y9b6b5h52kid57lvmvm05362zv1v8w0gc7xyv5xphlp44xf")) + +(define rust-windows-targets-0.53.5 + (crate-source "windows-targets" "0.53.5" + "1wv9j2gv3l6wj3gkw5j1kr6ymb5q6dfc42yvydjhv3mqa7szjia9")) + +(define rust-windows-x86-64-gnu-0.53.1 + (crate-source "windows_x86_64_gnu" "0.53.1" + "16d4yiysmfdlsrghndr97y57gh3kljkwhfdbcs05m1jasz6l4f4w" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-x86-64-gnullvm-0.53.1 + (crate-source "windows_x86_64_gnullvm" "0.53.1" + "1qbspgv4g3q0vygkg8rnql5c6z3caqv38japiynyivh75ng1gyhg" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-windows-x86-64-msvc-0.53.1 + (crate-source "windows_x86_64_msvc" "0.53.1" + "0l6npq76vlq4ksn4bwsncpr8508mk0gmznm6wnhjg95d19gzzfyn" + #:snippet '(delete-file-recursively "lib"))) + +(define rust-wyhash-0.5.0 + (crate-source "wyhash" "0.5.0" + "15f26hvx6nyp4d6iswha7rm3psidxa2k2iab1f1aqgsyq9iy3xms")) + +(define-cargo-inputs lookup-cargo-inputs + (gfaffix => + (list rust-adler2-2.0.1 + rust-aho-corasick-1.1.4 + rust-anstream-0.6.21 + rust-anstyle-1.0.13 + rust-anstyle-parse-0.2.7 + rust-anstyle-query-1.1.5 + rust-anstyle-wincon-3.0.11 + rust-anyhow-1.0.101 + rust-arrayvec-0.5.2 + rust-autocfg-1.5.0 + rust-bitflags-1.3.2 + rust-bitflags-2.11.0 + rust-boomphf-0.5.9 + rust-bstr-0.2.17 + rust-bytemuck-1.25.0 + rust-bytemuck-derive-1.10.2 + rust-byteorder-1.5.0 + rust-cc-1.2.56 + rust-cfg-if-1.0.4 + rust-clap-4.5.59 + rust-clap-builder-4.5.59 + rust-clap-derive-4.5.55 + rust-clap-lex-1.0.0 + rust-colorchoice-1.0.4 + rust-crc32fast-1.5.0 + rust-crossbeam-channel-0.5.15 + rust-crossbeam-deque-0.8.6 + rust-crossbeam-epoch-0.9.18 + rust-crossbeam-utils-0.8.21 + rust-either-1.15.0 + rust-env-filter-1.0.0 + rust-env-logger-0.11.9 + rust-equivalent-1.0.2 + rust-errno-0.3.14 + rust-find-msvc-tools-0.1.9 + rust-flate2-1.1.9 + rust-fnv-1.0.7 + rust-gfa-0.10.1 + rust-handlegraph-0.7.0-alpha.9 + rust-hashbrown-0.16.1 + rust-heck-0.5.0 + rust-indexmap-2.13.0 + rust-is-terminal-polyfill-1.70.2 + rust-jiff-0.2.20 + rust-jiff-static-0.2.20 + rust-lazy-static-1.5.0 + rust-lexical-core-0.7.6 + rust-libc-0.2.182 + rust-libz-sys-1.1.23 + rust-linux-raw-sys-0.11.0 + rust-log-0.4.29 + rust-memchr-2.8.0 + rust-memmap-0.7.0 + rust-miniz-oxide-0.8.9 + rust-nom-5.1.3 + rust-num-traits-0.2.19 + rust-once-cell-polyfill-1.70.2 + rust-pkg-config-0.3.32 + rust-portable-atomic-1.13.1 + rust-portable-atomic-util-0.2.5 + rust-proc-macro2-1.0.106 + rust-quote-1.0.44 + rust-rand-core-0.6.4 + rust-rayon-1.11.0 + rust-rayon-core-1.13.0 + rust-regex-1.12.3 + rust-regex-automata-0.1.10 + rust-regex-automata-0.4.14 + rust-regex-syntax-0.8.9 + rust-rustc-hash-2.1.1 + rust-rustix-1.1.3 + rust-ryu-1.0.23 + rust-serde-core-1.0.228 + rust-serde-derive-1.0.228 + rust-shlex-1.3.0 + rust-simd-adler32-0.3.8 + rust-static-assertions-1.1.0 + rust-strsim-0.11.1 + rust-succinct-0.5.2 + rust-syn-2.0.116 + rust-terminal-size-0.4.3 + rust-unicode-ident-1.0.24 + rust-utf8parse-0.2.2 + rust-vcpkg-0.2.15 + rust-version-check-0.9.5 + rust-winapi-0.3.9 + rust-winapi-i686-pc-windows-gnu-0.4.0 + rust-winapi-x86-64-pc-windows-gnu-0.4.0 + rust-windows-link-0.2.1 + rust-windows-sys-0.60.2 + rust-windows-sys-0.61.2 + rust-windows-targets-0.53.5 + rust-windows-aarch64-gnullvm-0.53.1 + rust-windows-aarch64-msvc-0.53.1 + rust-windows-i686-gnu-0.53.1 + rust-windows-i686-gnullvm-0.53.1 + rust-windows-i686-msvc-0.53.1 + rust-windows-x86-64-gnu-0.53.1 + rust-windows-x86-64-gnullvm-0.53.1 + rust-windows-x86-64-msvc-0.53.1 + rust-wyhash-0.5.0))) diff --git a/gn/packages/twint.scm b/gn/packages/twint.scm index b61b6ca..f665003 100644 --- a/gn/packages/twint.scm +++ b/gn/packages/twint.scm @@ -1,13 +1,16 @@ (define-module (gn packages twint) #:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages) + #:use-module (guix build-system pyproject) #:use-module (guix build-system python) + #:use-module (guix gexp) #:use-module (guix git-download) #:use-module (guix packages) #:use-module (guix download) #:use-module (gnu packages check) #:use-module (gnu packages geo) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-web) #:use-module (gnu packages python-science) #:use-module (gnu packages python-xyz) @@ -104,6 +107,47 @@ "cChardet is high speed universal character encoding detector.") (license #f))) +(define-public python-curio + (package + (name "python-curio") + (version "1.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "curio" version)) + (sha256 + (base32 "0isj3jl5mx6m25nr1f7r91hfaydhkvmks9p85dyvl5h2n9nmhajn")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list ;; AttributeError: 'NoneType' object has no attribute + ;; 'terminate' + "--deselect=tests/test_workers.py::test_exception" + ;; Tries to open an outgoing connection. + "--deselect=tests/test_network.py::test_ssl_outgoing" + ;; This test fails since Python 3.9.9, see + ;; <https://github.com/dabeaz/curio/issues/347>. + ;; AttributeError: 'NoneType' object has no attribute + ;; 'terminate' + "--deselect=tests/test_workers.py::test_worker_timeout" + ;; AttributeError: 'NoneType' object has no attribute + ;; 'terminate' + "--deselect=tests/test_workers.py::test_bad_cpu" + "--deselect=tests/test_workers.py::test_cpu" + "--deselect=tests/test_workers.py::test_worker_cancel"))) + (native-inputs + (list python-pytest + python-setuptools + python-wheel)) + (home-page "https://github.com/dabeaz/curio") + (synopsis "Coroutine-based library for concurrent Python") + (description + "Curio is a coroutine-based library for concurrent Python systems +programming. It provides standard programming abstractions such as as +tasks, sockets, files, locks, and queues.") + (license license:bsd-3))) + ;; TODO: Upstream (define-public python-socks (package diff --git a/gn/packages/virtualization.scm b/gn/packages/virtualization.scm index 22753f8..b176ec7 100644 --- a/gn/packages/virtualization.scm +++ b/gn/packages/virtualization.scm @@ -16,6 +16,7 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages protobuf) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-xyz) #:use-module (past packages python27)) |