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-rw-r--r--gn/packages/static.scm83
1 files changed, 0 insertions, 83 deletions
diff --git a/gn/packages/static.scm b/gn/packages/static.scm
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--- a/gn/packages/static.scm
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-;;;
-;;; Commentary:
-;;;
-;;; This module contains statically linked executables meant for use
-;;; with spike and gem5.
-;;;
-
-;;;
-;;; Code:
-;;;
-
-(define-module (gn packages static)
-  #:use-module (gnu packages base)
-  #:use-module (gnu packages bioinformatics)
-  #:use-module (gnu packages compression)
-  #:use-module (gnu packages cpp)
-  #:use-module (gnu packages jemalloc)
-  #:use-module (gnu packages maths)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix gexp)
-  #:use-module (guix packages)
-  #:use-module (guix utils))
-
-;; Static hello, for testing
-(define-public hello-static
-  (package
-    (inherit (static-package hello))
-    (name "hello-static")))
-
-;; A minimal version of htslib that does not depend on curl and openssl. This
-;; reduces the number of higher order dependencies in static linking.
-(define htslib-minimal
-  (package
-    (inherit htslib)
-    (arguments
-     (substitute-keyword-arguments (package-arguments htslib)
-       ((#:configure-flags flags ''())
-        ''())))
-    (inputs
-     (list bzip2 xz))))
-
-(define-public wfmash-static
-  (package
-    (inherit wfmash)
-    (name "wfmash-static")
-    (arguments
-     (substitute-keyword-arguments (package-arguments wfmash)
-       ((#:configure-flags flags ''())
-        `(cons* "-DCMAKE_EXE_LINKER_FLAGS=-static"
-                "-DCMAKE_SKIP_RPATH=TRUE"
-                ,flags))
-       ((#:phases phases ''())
-        #~(modify-phases #$phases
-            ;; When static linking, we need to link against the entire
-            ;; dependency tree, not just the direct first-order dependencies.
-            (add-after 'unpack 'add-higher-order-dependencies
-              (lambda _
-                (substitute* "CMakeLists.txt"
-                  (("hts" all)
-                   (string-append all " bz2 dl lzma"))
-                  (("jemalloc" all)
-                   ;; We add atomic because riscv64 has no lock-free atomic
-                   ;; instructions.
-                   (string-append all " atomic pthread")))))))))
-    (inputs
-     (list atomic-queue
-           (list gsl "static")
-           htslib-minimal
-           jemalloc
-           (list zlib "static")
-
-           ;; Second-order dependencies from htslib
-           (list bzip2 "static")
-           (list xz "static")))))
-
-(define-public smithwaterman-static
-  (package
-    (inherit smithwaterman)
-    (name "smithwaterman-static")
-    (arguments
-     (substitute-keyword-arguments (package-arguments smithwaterman)
-       ((#:make-flags flags ''())
-        #~(cons "CFLAGS=-static" #$flags))))))