diff options
Diffstat (limited to 'gn/packages/static.scm')
| -rw-r--r-- | gn/packages/static.scm | 83 |
1 files changed, 0 insertions, 83 deletions
diff --git a/gn/packages/static.scm b/gn/packages/static.scm deleted file mode 100644 index 67b4873..0000000 --- a/gn/packages/static.scm +++ /dev/null @@ -1,83 +0,0 @@ -;;; -;;; Commentary: -;;; -;;; This module contains statically linked executables meant for use -;;; with spike and gem5. -;;; - -;;; -;;; Code: -;;; - -(define-module (gn packages static) - #:use-module (gnu packages base) - #:use-module (gnu packages bioinformatics) - #:use-module (gnu packages compression) - #:use-module (gnu packages cpp) - #:use-module (gnu packages jemalloc) - #:use-module (gnu packages maths) - #:use-module (guix build-system gnu) - #:use-module (guix gexp) - #:use-module (guix packages) - #:use-module (guix utils)) - -;; Static hello, for testing -(define-public hello-static - (package - (inherit (static-package hello)) - (name "hello-static"))) - -;; A minimal version of htslib that does not depend on curl and openssl. This -;; reduces the number of higher order dependencies in static linking. -(define htslib-minimal - (package - (inherit htslib) - (arguments - (substitute-keyword-arguments (package-arguments htslib) - ((#:configure-flags flags ''()) - ''()))) - (inputs - (list bzip2 xz)))) - -(define-public wfmash-static - (package - (inherit wfmash) - (name "wfmash-static") - (arguments - (substitute-keyword-arguments (package-arguments wfmash) - ((#:configure-flags flags ''()) - `(cons* "-DCMAKE_EXE_LINKER_FLAGS=-static" - "-DCMAKE_SKIP_RPATH=TRUE" - ,flags)) - ((#:phases phases ''()) - #~(modify-phases #$phases - ;; When static linking, we need to link against the entire - ;; dependency tree, not just the direct first-order dependencies. - (add-after 'unpack 'add-higher-order-dependencies - (lambda _ - (substitute* "CMakeLists.txt" - (("hts" all) - (string-append all " bz2 dl lzma")) - (("jemalloc" all) - ;; We add atomic because riscv64 has no lock-free atomic - ;; instructions. - (string-append all " atomic pthread"))))))))) - (inputs - (list atomic-queue - (list gsl "static") - htslib-minimal - jemalloc - (list zlib "static") - - ;; Second-order dependencies from htslib - (list bzip2 "static") - (list xz "static"))))) - -(define-public smithwaterman-static - (package - (inherit smithwaterman) - (name "smithwaterman-static") - (arguments - (substitute-keyword-arguments (package-arguments smithwaterman) - ((#:make-flags flags ''()) - #~(cons "CFLAGS=-static" #$flags)))))) |
