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Diffstat (limited to 'gn/packages/python24.scm')
| -rw-r--r-- | gn/packages/python24.scm | 545 |
1 files changed, 0 insertions, 545 deletions
diff --git a/gn/packages/python24.scm b/gn/packages/python24.scm deleted file mode 100644 index 381b1ef..0000000 --- a/gn/packages/python24.scm +++ /dev/null @@ -1,545 +0,0 @@ -(define-module (gn packages python24) - #:use-module ((guix licenses) #:prefix license:) - #:use-module (guix utils) - #:use-module (guix packages) - #:use-module (guix download) - #:use-module (guix git-download) - #:use-module (guix build-system copy) - #:use-module (guix build-system python) - #:use-module (gn packages databases) - #:use-module (gn packages python) - #:use-module (past packages python) - #:use-module (past packages tls) - #:use-module (gnu packages compression) - #:use-module (gnu packages databases) - #:use-module (gnu packages elf) - #:use-module (gnu packages gcc) - #:use-module (gnu packages maths) - #:use-module (gnu packages python-xyz) - ; #:use-module (gnu packages tls) - #:use-module (srfi srfi-1)) - -(define (default-python2.4) - "Return the default Python-2.4 package." - ;; Lazily resolve the binding. - (let ((python (resolve-interface '(past packages python)))) - (module-ref python 'python-2.4))) - -;; We borrow this from (guix build-system python) since we cannot refer to it -;; with the magic '@@' symbol since Guix has switched to guile-3.0. -(define* (package-with-explicit-python python old-prefix new-prefix - #:key variant-property) - "Return a procedure of one argument, P. The procedure creates a package with -the same fields as P, which is assumed to use PYTHON-BUILD-SYSTEM, such that -it is compiled with PYTHON instead. The inputs are changed recursively -accordingly. If the name of P starts with OLD-PREFIX, this is replaced by -NEW-PREFIX; otherwise, NEW-PREFIX is prepended to the name. - -When VARIANT-PROPERTY is present, it is used as a key to search for -pre-defined variants of this transformation recorded in the 'properties' field -of packages. The property value must be the promise of a package. This is a -convenient way for package writers to force the transformation to use -pre-defined variants." - (define package-variant - (if variant-property - (lambda (package) - (assq-ref (package-properties package) - variant-property)) - (const #f))) - - (define (transform p) - (cond - ;; If VARIANT-PROPERTY is present, use that. - ((package-variant p) - => force) - - ;; Otherwise build the new package object graph. - ((eq? (package-build-system p) python-build-system) - (package - (inherit p) - (location (package-location p)) - (name (let ((name (package-name p))) - (string-append new-prefix - (if (string-prefix? old-prefix name) - (substring name - (string-length old-prefix)) - name)))) - (arguments - (let ((python (if (promise? python) - (force python) - python))) - (ensure-keyword-arguments (package-arguments p) - `(#:python ,python)))))) - (else p))) - - (define (cut? p) - (or (not (eq? (package-build-system p) python-build-system)) - (package-variant p))) - - (package-mapping transform cut?)) - -(define package-with-python24 - (package-with-explicit-python (delay (default-python2.4)) - "python-" "python24-" - #:variant-property 'python24-variant)) - -(define (strip-python24-variant p) - (package - (inherit p) - (properties (alist-delete 'python24-variant (package-properties p))))) - -(define-public python24-htmlgen - (package - (name "python24-htmlgen") - (version "0.9") - ;(version "0.99") - (source - (origin - (method url-fetch) - (uri (pypi-uri "htmlgen" version)) - (sha256 - (base32 - "14xzjgwdqgs1vs5mq7mg3w48snvgb77yywv64mg8k6qhapmnafdw")))) - ;"1kbn6jcbf2mpb9f8hm5gcsipy7habqrq4794lpdbzm5mqxlclmnl")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4)) - (native-inputs - `(("python24-setuptools" ,python24-setuptools))) - (propagated-inputs - `(("python24-asserts" ,python24-asserts))) - (home-page "https://github.com/srittau/python-htmlgen") - (synopsis "Python HTML 5 Generator") - (description "Python-htmlgen is a library to generate HTML from classes.") - (license license:expat))) - -(define-public python24-asserts - (package - (name "python24-asserts") - (version "0.6") - (source - (origin - (method url-fetch) - (uri (pypi-uri "asserts" version)) - (sha256 - (base32 - "05ffy111giwv6sqx97vzzsvcra0gxzx2ilv16gyw135v583frxbn")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4)) - (native-inputs - `(("python24-setuptools" ,python24-setuptools))) - (home-page "https://github.com/srittau/python-asserts") - (synopsis "Stand-alone Assertions for Python") - (description "Stand-alone Assertions for Python") - (license license:expat))) - -(define-public python24-pil - (package - (inherit python2-pil1) - (name "python24-pil") - (arguments - (substitute-keyword-arguments (package-arguments python2-pil1) - ((#:python _) python-2.4) - ((#:phases phases '%standard-phases) - `(modify-phases ,phases - (replace 'add-install-to-pythonpath - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append (site-packages inputs outputs) ":" - (getenv "PYTHONPATH"))))) - (delete 'sanity-check))))))) ; Not applicable to python-2.4 - -(define-public python24-piddle - (package - (inherit python2-piddle-gn) - (name "python24-piddle") - (arguments - (substitute-keyword-arguments (package-arguments python2-piddle-gn) - ((#:python _) python-2.4) - ((#:phases phases '%standard-phases) - `(modify-phases ,phases - (replace 'add-install-to-pythonpath - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append (site-packages inputs outputs) ":" - (getenv "PYTHONPATH"))))) - (delete 'sanity-check))))) ; Not applicable to python-2.4 - (native-inputs `(("python24-setuptools" ,python24-setuptools))) - (propagated-inputs - `(("python24-pil" ,python24-pil))))) - -;; Apparently this is the library which mimics python-2.6+'s json library -(define-public python24-simplejson - (let ((base (package-with-python24 python-simplejson))) - (package - (inherit base) - (version "2.0.9") ; last version to officially support python2.4 - (source - (origin - (method url-fetch) - (uri (pypi-uri "simplejson" version)) - (sha256 - (base32 - "1vlkxibal9ljabybawnqr3jh6f6g21c5pbrzl65z9vwbfxhg9kdb")))) - (native-inputs - `(("python24-setuptools" ,python24-setuptools) - ,@(package-native-inputs base)))))) - -(define-public python24-parallel - (package - (inherit python-parallel) - (name "python24-parallel") - (arguments - `(#:python ,python-2.4 - #:use-setuptools? #f - #:tests? #f)))) ; no tests - -(define GN1-thirdparty-sources - (origin - (method url-fetch/tarbomb) - (uri "https://files.genenetwork.org/software/thirdparty.tgz") - (file-name "GN1-thirdparty") - (sha256 - (base32 - "0nnp6g412hjfrcn3k2yrfb14sxv06k0149whc7qmv678nyj5zhfa")))) - -(define-public python24-json-GN1 - (package - (name "python24-json-GN1") - (version "GN1") - (source GN1-thirdparty-sources) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:phases - (modify-phases %standard-phases - (delete 'build) - (delete 'check) - (replace 'add-install-to-pythonpath - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append (site-packages inputs outputs) ":" - (getenv "PYTHONPATH"))))) - (delete 'sanity-check) ; Not applicable to python-2.4 - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (sitedir (string-append out "/lib/python2.4/site-packages/json/"))) - (mkdir-p sitedir) - (copy-recursively "thirdparty/json" sitedir))))))) - (home-page "") - (synopsis "") - (description "") - (license license:lgpl2.1+))) - -(define-public python24-svg-GN1 - (package - (name "python24-svg-GN1") - (version "1.0") - (source GN1-thirdparty-sources) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:phases - (modify-phases %standard-phases - (delete 'build) - (delete 'check) - (replace 'add-install-to-pythonpath - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append (site-packages inputs outputs) ":" - (getenv "PYTHONPATH"))))) - (delete 'sanity-check) ; Not applicable to python-2.4 - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (sitedir (string-append out "/lib/python2.4/site-packages/svg/"))) - (mkdir-p sitedir) - (copy-recursively "thirdparty/svg" sitedir))))))) - (home-page "") - (synopsis "") - (description "") - (license license:bsd-4))) - -(define-public python24-htmlgen-GN1 - (package - (name "python24-htmlgen-GN1") - (version "2.5") - (source GN1-thirdparty-sources) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:phases - (modify-phases %standard-phases - (delete 'build) - (delete 'check) - (replace 'add-install-to-pythonpath - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append (site-packages inputs outputs) ":" - (getenv "PYTHONPATH"))))) - (delete 'sanity-check) ; Not applicable to python-2.4 - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (sitedir (string-append out "/lib/python2.4/site-packages/htmlgen/"))) - (mkdir-p sitedir) - (copy-recursively "thirdparty/htmlgen" sitedir) - #t)))))) - (home-page "") - (synopsis "") - (description "") - (license license:bsd-2))) ; I'm not actually sure, checked HTMLgen.py - -(define-public python24-pyx-GN1 - (package - (name "python24-pyx-GN1") - (version "0.8") - (source GN1-thirdparty-sources) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:phases - (modify-phases %standard-phases - (delete 'build) - (delete 'check) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (sitedir (string-append out "/lib/python2.4/site-packages/pyx/"))) - (mkdir-p sitedir) - (copy-recursively "thirdparty/pyx" sitedir) - #t)))))) - (home-page "") - (synopsis "") - (description "") - (license license:gpl2+))) - -(define-public python24-pyxlwriter-GN1 - (package - (name "python24-pyxlwriter-GN1") - (version "0.4a3") - (source GN1-thirdparty-sources) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:phases - (modify-phases %standard-phases - (delete 'build) - (delete 'check) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (sitedir (string-append out "/lib/python2.4/site-packages/pyXLWriter/"))) - (mkdir-p sitedir) - (copy-recursively "thirdparty/pyXLWriter" sitedir) - #t)))))) - (home-page "") - (synopsis "") - (description "") - (license license:lgpl2.1+))) - -(define-public python24-pp-GN1 - (package - (name "python24-pp-GN1") - (version "1.5.7") - (source GN1-thirdparty-sources) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:use-setuptools? #f - #:tests? #f - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'change-directory - (lambda _ - (chdir "thirdparty/pp-1.5.7"))) - (replace 'add-install-to-pythonpath - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append (site-packages inputs outputs) ":" - (getenv "PYTHONPATH"))))) - (delete 'sanity-check)))) ; Not applicable to python-2.4 - (home-page "") - (synopsis "") - (description "") - (license license:bsd-3))) - -;; 1.2.3 exactly. There was an API change between 1.2.3 and 1.2.5. -;; https://stackoverflow.com/questions/21740359/python-mysqldb-typeerror-not-all-arguments-converted-during-string-formatting/53563287#53563287 -(define-public python24-mysqlclient - (package - (name "python24-mysqlclient") - (version "1.2.3") - (source - (origin - (method url-fetch) - (uri (pypi-uri "MySQL-python" version)) - (sha256 - (base32 - "0vkyg9dmj29hzk7fy77f42p7bfj28skyzsjsjry4wqr3z6xnzrkx")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:phases - (modify-phases %standard-phases - (replace 'add-install-to-pythonpath - (lambda* (#:key inputs outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append (site-packages inputs outputs) ":" - (getenv "PYTHONPATH"))))) - (delete 'sanity-check) ; Not applicable to python-2.4 - (add-before 'check 'pre-check - (lambda* (#:key inputs tests? #:allow-other-keys) - (when tests? - (begin - (mkdir-p "/tmp/mysqld") - (call-with-output-file "/tmp/my.cnf" - (lambda (p) - (format p - "[mysqld]~@ - datadir = /tmp/mysqld~@ - port = 3306~@ - user = nixbld~@ - #character-set-server = utf8mb4~@ - socket = /tmp/mysqld/mysql.sock~%"))) - (setenv "TESTDB" "/tmp/my.cnf") - ;; mysql-5.0 puts mysqld in libexec - (setenv "PATH" (string-append (getenv "PATH") ":" - (assoc-ref inputs "mysql") "/libexec")) - (system "mysqld --defaults-file=/tmp/my.cnf &") - (sleep 5) - (invoke "mysqladmin" "-S" "/tmp/mysqld/mysql.sock" "variables") - (invoke "mysql" "-S" "/tmp/mysqld/mysql.sock" - "-e" "'create database mysqldb_test charset utf8;'")))))) - #:tests? #f)) ; TODO: Run the test suite - (native-inputs - `(("mysql" ,mysql-5.0) ; Best supported version according to the README. - ("python-nose" ,python24-nose) - ("python-setuptools" ,python24-setuptools))) - (inputs - `(("openssl" ,openssl-1.0) - ("zlib" ,zlib))) - (home-page "http://mysql-python.sourceforge.net/") - (synopsis "Python interface to MySQL") - (description "MySQLdb is an interface to the popular MySQL database server -for Python. The design goals are: -@itemize -@item with Python database API version 2.0 -@item Thread-safety -@item Thread-friendliness (threads will not block each other) -@item Compatibility with MySQL-3.23 and later -@end itemize") - (license license:gpl2+))) - -;; It seems this isn't the correct DIRECT binary -(define-public python24-direct - (package - (name "python24-direct") - (version "1.0.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "DIRECT" version)) - (sha256 - (base32 - "1d4cf9hynlr42hq0k8w7j4qi45rkrgil332sh0hymklxgmyi21h5")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Files are autogenerated using f2py. - (delete-file "src/direct-f2pywrappers.f") - (delete-file "src/directmodule.c") - #t)))) - (build-system python-build-system) - (arguments - `(#:python ,python-2.4 - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-source - (lambda _ - (substitute* "DIRECT/__init__.py" - (("\\.direct") "direct")) - #t)) - (replace 'check - (lambda* (#:key tests? inputs outputs #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (with-directory-excursion "test" - (invoke "python" "test_direct.py"))) - #t)) - (add-after 'install 'copy-library - (lambda* (#:key outputs #:allow-other-keys) - (with-directory-excursion - (string-append (assoc-ref outputs "out") - "/lib/python2.4/site-packages") - (copy-file "DIRECT/direct.so" "direct.so")) - #t)) - (replace 'install-license-files - (lambda* (#:key outputs #:allow-other-keys) - (install-file "COPYRIGHT" - (string-append (assoc-ref outputs "out") - "/share/doc/" ,name "-" ,version)) - #t))))) - (propagated-inputs - `(("python24-numpy" ,python24-numpy-1.2))) - (inputs - `(("gfortran" ,gfortran))) - (native-inputs - `(("python24-nose" ,python24-nose) - ("python24-setuptools" ,python24-setuptools))) - ;; Also seems to be here: https://github.com/amitibo/pydirect - (home-page "http://code.google.com/p/pydirect/") - (synopsis "Python wrapper to the DIRECT algorithm") - (description - "DIRECT is a method to solve global bound constraint optimization problems -and was originally developed by D. R. Jones, C. D. Perttunen and B. E. Stuckmann. -@code{pydirect} is a python wrapper around DIRECT. It enables using DIRECT from -the comfort of the great Python scripting language. -The @code{pydirect} package uses the fortan implementation of DIRECT written by -Joerg.M.Gablonsky, DIRECT Version 2.0.4. More information on the DIRECT -algorithm can be found in Gablonsky's -@url{http://repository.lib.ncsu.edu/ir/bitstream/1840.16/3920/1/etd.pdf, -thesis}.") - (license license:expat))) - -(define-public python24-direct-gn - (package - (name "python24-direct-gn") - (version "GN") - (source (origin - (method url-fetch) - (uri "https://files.genenetwork.org/software/direct.so") - (file-name "direct.so") - (sha256 - (base32 - "0kj11dbi25k0wvyxxsylx7dsc7wm7rja799fymklkdd8h561la4i")))) - (build-system copy-build-system) - (arguments - `(#:install-plan - '(("direct.so" "lib/python2.4/site-packages/")) - #:phases - (modify-phases %standard-phases - (replace 'unpack - (lambda* (#:key inputs #:allow-other-keys) - (copy-file (assoc-ref inputs "source") "direct.so") - #t)) - (add-after 'unpack 'patchelf - (lambda* (#:key inputs #:allow-other-keys) - ;; Writable so we can use patchelf, executable so it is useful. - ;; After installation the writable bit is stripped off. - (chmod "direct.so" #o777) - (invoke "patchelf" - "--set-rpath" - (string-append (assoc-ref inputs "gcc:lib") "/lib") - "direct.so") - #t))))) - (inputs - `(("gcc:lib" ,gcc "lib"))) - (native-inputs - `(("patchelf" ,patchelf))) - (home-page "") - (synopsis "") - (description "") - (license #f))) |