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Bioinformatics packages for GNU Guix
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Author
3 days
mempang-workshop: Add gawk and which to propagated-inputs
HEAD
main
wrk
3 days
mbg: Unbundle recursive git submodule and use system parallel-hashmap
wrk
3 days
Unbundling recursive git submodules
wrk
2026-04-20
Fix path
pjotrp
2026-04-19
Add (pangenome) agc package
pjotrp
2026-04-18
Downgrade to wfmash-0.14 for mempang and add tools for the workshop
pjotrp
2026-04-17
Moving patches around so we can use loadpath again
pjotrp
2026-04-17
Patch (opensmtp) because it fails on sendmail -t
pjotrp
2026-04-17
● All part1.md tutorial steps reproduce successfully:
pjotrp
2026-04-17
- cigzip (binary, 0.1.0-b7cc0ed) -- successfully packaged and added to pang...
pjotrp
2026-04-16
● All 29 packages in manifest.scm.example built successfully! No failures.
pjotrp
2026-04-16
Added (pangenomes) rtg-tools
pjotrp
2026-04-16
Add (pangenomes) gfalook
pjotrp
2026-04-16
Added (pangenome) pafplot
pjotrp
2026-04-16
Adding packages for the mempang workshop
pjotrp
2026-04-15
Mempang25 workshop
pjotrp
2026-04-15
Added bandageNG
pjotrp
2026-04-15
Added vg package back in
pjotrp
2026-04-15
Allow tuning rust packages
pjotrp
2026-04-15
Re-add vcflib package
pjotrp
2026-04-11
pangenome: impg: updated to latest commit
pjotrp
2026-04-11
Make tools tunable (pangenome)
pjotrp
2026-04-10
Allow for tuning of C++ and Rust packages --tune=native
pjotrp
2026-04-10
Make these pangenome packages tunable
pjotrp
2026-04-10
New package (pangenomes) meta-package
pjotrp
2026-04-09
Rename channels.scm to avoid guix pull compilation error [AI]
pjotrp
2026-04-08
Propagate snakemake (cosigt)
pjotrp
2026-04-08
Fix cosigt propagation for workflow and missing getopts in pggb
pjotrp
2026-04-05
Add test (impg) integration test
pjotrp
2026-04-04
Propagate fastga-rs in impg
pjotrp
2026-04-04
Downgraded (wfmash) from 0.24 to 0.14. Pggb requires that. Cosigt tests:
pjotrp
2026-04-04
Update tests so they pass for cosigt
pjotrp
2026-04-03
Add wfmash recent
pjotrp
2026-04-03
Get pangenome tools going again
pjotrp
2026-04-03
Working on cosigt and odgi (WIP)
pjotrp
2026-04-02
Enable tests (impg)
pjotrp
2026-04-02
Getting rid of guix-past dependency
pjotrp
2026-04-02
Get rid of python-nose warning
pjotrp
2026-04-02
Updated (impg) to latest with dependencies
pjotrp
2026-04-02
Milestone achieved: guix-bioinformatics no longer depends on guix-rust-past-c...
pjotrp
2026-04-02
More surgery:
pjotrp
2026-04-02
Updated rust package for qtlreaper
pjotrp
2026-04-02
Move (gfaffix) to rust package
pjotrp
2026-04-02
Changed URLs for Chris packages
pjotrp
2026-04-02
Updated (gfautil) to latest rust packaging
pjotrp
2026-04-02
Moved all pangenome Rust packages to pangenome-rust.scm
pjotrp
2026-04-02
Added a number of packages for cosigt/impg:
pjotrp
2026-03-24
Fixes after a recent guix pull
pjotrp
2026-03-24
pylmm-gn2 moved to past
pjotrp
2026-03-23
Packages reintroduced for GN
pjotrp
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