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(use-modules (guix packages)
(guix git-download)
(gnu packages check)
(gnu packages databases)
(gnu packages python-xyz)
(gnu packages python-web)
(guix build-system python)
(gnu packages python-check)
((guix licenses) #:prefix license:))
(package
(name "genenetwork-qc")
(version "0.0.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://git.genenetwork.org/fredmanglis/gnqc_py.git")
(commit "3116206b9eca593323c7e25b200ebc76b9a59f6c")))
(sha256
(base32
"1q949yvj391b8kdr2a5143gfz1h4p5ig4l3cwcsahz5lq7p93ff0"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest")))))))
(native-inputs
(list python-mypy
python-pylint
python-pytest
python-hypothesis))
(propagated-inputs
(list python-rq
python-magic
python-flask
python-jsonpickle))
(synopsis "GeneNetwork Quality Control Application")
(description
"GeneNetwork qc is a quality control application for the data files that
eventually are used to add to the data in the GeneNetwork project.")
(home-page "https://git.genenetwork.org/fredmanglis/gnqc_py")
(license license:gpl3))
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