(use-modules (guix packages)
	     (guix git-download)
	     (gnu packages check)
	     (gnu packages databases)
	     (gnu packages python-xyz)
	     (gnu packages python-web)
	     (guix build-system python)
	     (gnu packages python-check)
	     ((guix licenses) #:prefix license:))

(package
 (name "genenetwork-qc")
 (version "0.0.1")
 (source (origin
	  (method git-fetch)
	  (uri (git-reference
		(url "https://git.genenetwork.org/fredmanglis/gnqc_py.git")
		(commit "3116206b9eca593323c7e25b200ebc76b9a59f6c")))
	  (sha256
	   (base32
	    "1q949yvj391b8kdr2a5143gfz1h4p5ig4l3cwcsahz5lq7p93ff0"))))
 (build-system python-build-system)
 (arguments
  `(#:phases
    (modify-phases %standard-phases
      (replace 'check
	(lambda* (#:key tests? #:allow-other-keys)
	  (when tests?
	    (invoke "pytest")))))))
 (native-inputs
  (list python-mypy
	python-pylint
	python-pytest
	python-hypothesis))
 (propagated-inputs
  (list python-rq
	python-magic
	python-flask
	python-jsonpickle))
 (synopsis "GeneNetwork Quality Control Application")
 (description
  "GeneNetwork qc is a quality control application for the data files that
 eventually are used to add to the data in the GeneNetwork project.")
 (home-page "https://git.genenetwork.org/fredmanglis/gnqc_py")
 (license license:gpl3))