aboutsummaryrefslogtreecommitdiff
path: root/scripts
AgeCommit message (Expand)Author
2024-10-24Check phenocovar files with loggingFrederick Muriuki Muriithi
2024-10-24Fix linting and typing errors.Frederick Muriuki Muriithi
2024-10-24Add a `--loglevel` argument to select loglevel in scriptsFrederick Muriuki Muriithi
2024-10-24Parse entire namespace object rather than individual values.Frederick Muriuki Muriithi
2024-10-24Move logger creation to `build_main` functionFrederick Muriuki Muriithi
2024-10-24Add handler to send log messages to specific Redis listFrederick Muriuki Muriithi
2024-10-22Refactor `qc_pheno_file` and reuse it for different file types.Frederick Muriuki Muriithi
2024-10-22Check for errors in `pheno` files.Frederick Muriuki Muriithi
2024-10-21Check `phenocovar` files for errors.Frederick Muriuki Muriithi
2024-10-17Cleanup: Delete all extracted files after processing.Frederick Muriuki Muriithi
2024-10-17Leave TODO notes for what needs to be done.Frederick Muriuki Muriithi
2024-10-17Fetch samples from databaseFrederick Muriuki Muriithi
2024-10-17Undo transpose for any transposed filesFrederick Muriuki Muriithi
2024-10-17Pass new arguments to QC function.Frederick Muriuki Muriithi
2024-10-17Add `speciesid` and `populationid` arguments to the script.Frederick Muriuki Muriithi
2024-10-17Add the working directory argument to the script.Frederick Muriuki Muriithi
2024-10-17Extract the R/qtl2 bundle for processing.Frederick Muriuki Muriithi
2024-10-17Extract common functions.Frederick Muriuki Muriithi
2024-10-17Save errors for each file in lists. Parallelise error checking.Frederick Muriuki Muriithi
2024-10-17Rewrite the QC code for R/qtl2Frederick Muriuki Muriithi
2024-10-14Initialise background script for running QC on phenotype bundles.Frederick Muriuki Muriithi
2024-10-14BugFix: Use provided prefixFrederick Muriuki Muriithi
2024-10-14Make addition of arguments independent of each other.Frederick Muriuki Muriithi
2024-09-09Enable samples uploads.Frederick Muriuki Muriithi
2024-09-03Initialise the populations package and update references.Frederick Muriuki Muriithi
2024-08-28Move code handling expression data upload into new module.Frederick Muriuki Muriithi
2024-08-16Log out correct parameters.Frederick Muriuki Muriithi
2024-08-13Bug: cross reference with NULL cM when "gmap" file is absentFrederick Muriuki Muriithi
2024-08-12Rename module: Module contains exceptions classes.Frederick Muriuki Muriithi
2024-08-08Fix bugs and pass in logger to functions.Frederick Muriuki Muriithi
2024-08-06Pass logger on to inner functionsFrederick Muriuki Muriithi
2024-07-25Fix typing and linting errors.Frederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
2024-07-05bug: Return a hashable key, not a dict.Frederick Muriuki Muriithi
2024-07-02Call correct method.Frederick Muriuki Muriithi
2024-07-02Ensure no duplicated values for the query.Frederick Muriuki Muriithi
2024-07-01Check for genotype samples in the databaseFrederick Muriuki Muriithi
2024-06-27Fix bug with the logging setup.Frederick Muriuki Muriithi
2024-04-12Move entry-point module to scripts package.Frederick Muriuki Muriithi
2024-04-08Fix pylint and mypy errors.Frederick Muriuki Muriithi
2024-04-04Remove unused database connection.Frederick Muriuki Muriithi
2024-04-03Reduce size of data inserted per queryFrederick Muriuki Muriithi
2024-03-29Quiet linter.Frederick Muriuki Muriithi
2024-03-22Notify user if identifiers are not consistent.Frederick Muriuki Muriithi
2024-03-22Map names in files to names in database.Frederick Muriuki Muriithi
2024-03-22Fix linting issue.Frederick Muriuki Muriithi
2024-03-20Fix bug: correctly merge standard-error values in file to data in dbFrederick Muriuki Muriithi
2024-02-28Fix bug: fetch from cursor, not return from cursor.execute(…)load-raw-data-no-parsingFrederick Muriuki Muriithi
2024-02-21Check that samples/cases are consistentFrederick Muriuki Muriithi
2024-02-21Pass 'filename' value to error checker function.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-01 23:19:52 +0000