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gn-uploader: Data uploader for GeneNetwork
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install_genotypes.py
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13 days
Pass the redis connection and fully qualified job id
Frederick Muriuki Muriithi
2024-10-24
Parse entire namespace object rather than individual values.
Frederick Muriuki Muriithi
2024-10-24
Move logger creation to `build_main` function
Frederick Muriuki Muriithi
2024-08-16
Log out correct parameters.
Frederick Muriuki Muriithi
2024-08-13
Bug: cross reference with NULL cM when "gmap" file is absent
Frederick Muriuki Muriithi
2024-08-08
Fix bugs and pass in logger to functions.
Frederick Muriuki Muriithi
2024-08-06
Pass logger on to inner functions
Frederick Muriuki Muriithi
2024-07-05
bug: Return a hashable key, not a dict.
Frederick Muriuki Muriithi
2024-07-02
Call correct method.
Frederick Muriuki Muriithi
2024-07-02
Ensure no duplicated values for the query.
Frederick Muriuki Muriithi
2024-04-03
Reduce size of data inserted per query
Frederick Muriuki Muriithi
2024-02-15
Filter out NULL values
Frederick Muriuki Muriithi
2024-02-05
Fix linting and type errors.
Frederick Muriuki Muriithi
2024-01-22
scripts: Pass in logger to get detailed updates.
Frederick Muriuki Muriithi
2024-01-19
scripts: Process R/qtl2 bundle
Frederick Muriuki Muriithi
2024-01-15
Update imports: `take` was moved to different package.
Frederick Muriuki Muriithi
2024-01-15
Extract common structure into separate modules.
Frederick Muriuki Muriithi
2024-01-11
Update pmap data in the database.
Frederick Muriuki Muriithi
2024-01-11
Update gmap data in the database
Frederick Muriuki Muriithi
2024-01-11
Cleanup linting and typing errors.
Frederick Muriuki Muriithi
2024-01-11
CLI: Require datasetid as an argument.
Frederick Muriuki Muriithi
2024-01-10
Provide convenience functions to avoid subtle call errors
Frederick Muriuki Muriithi
2024-01-10
Cross-reference genotype data to the dataset.
Frederick Muriuki Muriithi
2024-01-10
Insert genotype data.
Frederick Muriuki Muriithi
2024-01-10
Cross-reference individuals to populations.
Frederick Muriuki Muriithi
2024-01-10
Insert any new individuals/samples into the database.
Frederick Muriuki Muriithi
2024-01-10
Insert any new markers
Frederick Muriuki Muriithi
2024-01-09
WIP: Install genotypes from R/qtl2 bundle
Frederick Muriuki Muriithi