Parse entire namespace object rather than individual values.

1 files changed, 4 insertions, 5 deletions

diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py
index abc3f07..20a19da 100644
--- a/scripts/rqtl2/install_genotypes.py
+++ b/scripts/rqtl2/install_genotypes.py
@@ -1,7 +1,7 @@
 """Load genotypes from R/qtl2 bundle into the database."""
 import sys
+import argparse
 import traceback
-from pathlib import Path
 from zipfile import ZipFile
 from functools import reduce
 from typing import Iterator, Optional
@@ -187,13 +187,12 @@ def cross_reference_genotypes(
 
 def install_genotypes(#pylint: disable=[too-many-arguments, too-many-locals]
         dbconn: mdb.Connection,
-        speciesid: int,
-        populationid: int,
-        datasetid: int,
-        rqtl2bundle: Path,
+        args: argparse.Namespace,
         logger: Logger = getLogger(__name__)
 ) -> int:
     """Load any existing genotypes into the database."""
+    (speciesid, populationid, datasetid, rqtl2bundle) = (
+         args.speciesid, args.populationid, args.datasetid, args.rqtl2bundle)
     count = 0
     with ZipFile(str(rqtl2bundle.absolute()), "r") as zfile:
         try: