Pass the redis connection and fully qualified job id

Pass the redis connection on to the function used to build main since
it might need to use a connection to redis.

Also pass the computed fully qualified job id rather than recomputing
it every time.

Update dependent functions to take the new arguments.

1 files changed, 4 insertions, 1 deletions

diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py
index 20a19da..8762655 100644
--- a/scripts/rqtl2/install_genotypes.py
+++ b/scripts/rqtl2/install_genotypes.py
@@ -7,6 +7,7 @@ from functools import reduce
 from typing import Iterator, Optional
 from logging import Logger, getLogger
 
+from redis import Redis
 import MySQLdb as mdb
 from MySQLdb.cursors import DictCursor
 
@@ -185,8 +186,10 @@ def cross_reference_genotypes(
         cursor.executemany(insertquery, insertparams)
         return cursor.rowcount
 
-def install_genotypes(#pylint: disable=[too-many-arguments, too-many-locals]
+def install_genotypes(#pylint: disable=[too-many-locals]
+        rconn: Redis,#pylint: disable=[unused-argument]
         dbconn: mdb.Connection,
+        fullyqualifiedjobid: str,#pylint: disable=[unused-argument]
         args: argparse.Namespace,
         logger: Logger = getLogger(__name__)
 ) -> int: