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path: root/scripts/rqtl2
AgeCommit message (Expand)Author
11 daysReduce number of local variables created in function.HEADmainFrederick Muriuki Muriithi
11 daysAdd `jobid` to extraction directoryFrederick Muriuki Muriithi
11 daysCheck pheno, phenose, and phenonum files with loggingFrederick Muriuki Muriithi
11 daysCheck phenocovar files with loggingFrederick Muriuki Muriithi
11 daysFix linting and typing errors.Frederick Muriuki Muriithi
11 daysParse entire namespace object rather than individual values.Frederick Muriuki Muriithi
11 daysMove logger creation to `build_main` functionFrederick Muriuki Muriithi
13 daysRefactor `qc_pheno_file` and reuse it for different file types.Frederick Muriuki Muriithi
13 daysCheck for errors in `pheno` files.Frederick Muriuki Muriithi
2024-10-21Check `phenocovar` files for errors.Frederick Muriuki Muriithi
2024-10-17Cleanup: Delete all extracted files after processing.Frederick Muriuki Muriithi
2024-10-17Leave TODO notes for what needs to be done.Frederick Muriuki Muriithi
2024-10-17Fetch samples from databaseFrederick Muriuki Muriithi
2024-10-17Undo transpose for any transposed filesFrederick Muriuki Muriithi
2024-10-17Pass new arguments to QC function.Frederick Muriuki Muriithi
2024-10-17Add `speciesid` and `populationid` arguments to the script.Frederick Muriuki Muriithi
2024-10-17Add the working directory argument to the script.Frederick Muriuki Muriithi
2024-10-17Extract the R/qtl2 bundle for processing.Frederick Muriuki Muriithi
2024-10-17Extract common functions.Frederick Muriuki Muriithi
2024-10-14Initialise background script for running QC on phenotype bundles.Frederick Muriuki Muriithi
2024-10-14BugFix: Use provided prefixFrederick Muriuki Muriithi
2024-10-14Make addition of arguments independent of each other.Frederick Muriuki Muriithi
2024-08-16Log out correct parameters.Frederick Muriuki Muriithi
2024-08-13Bug: cross reference with NULL cM when "gmap" file is absentFrederick Muriuki Muriithi
2024-08-08Fix bugs and pass in logger to functions.Frederick Muriuki Muriithi
2024-08-06Pass logger on to inner functionsFrederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
2024-07-05bug: Return a hashable key, not a dict.Frederick Muriuki Muriithi
2024-07-02Call correct method.Frederick Muriuki Muriithi
2024-07-02Ensure no duplicated values for the query.Frederick Muriuki Muriithi
2024-04-03Reduce size of data inserted per queryFrederick Muriuki Muriithi
2024-02-15Filter out NULL valuesFrederick Muriuki Muriithi
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-01-23Update scripts to use redis prefix.Frederick Muriuki Muriithi
2024-01-22scripts: Pass in logger to get detailed updates.Frederick Muriuki Muriithi
2024-01-19scripts: Process R/qtl2 bundleFrederick Muriuki Muriithi
2024-01-16Filter out items with values of `None`.Frederick Muriuki Muriithi
2024-01-15Update imports: `take` was moved to different package.Frederick Muriuki Muriithi
2024-01-15Process the `pheno` files.Frederick Muriuki Muriithi
2024-01-15Initialise `install_phenos` script.Frederick Muriuki Muriithi
2024-01-15Extract common structure into separate modules.Frederick Muriuki Muriithi
2024-01-11Update pmap data in the database.Frederick Muriuki Muriithi
2024-01-11Update gmap data in the databaseFrederick Muriuki Muriithi
2024-01-11Cleanup linting and typing errors.Frederick Muriuki Muriithi
2024-01-11CLI: Require datasetid as an argument.Frederick Muriuki Muriithi
2024-01-10Provide convenience functions to avoid subtle call errorsFrederick Muriuki Muriithi
2024-01-10Cross-reference genotype data to the dataset.Frederick Muriuki Muriithi
2024-01-10Insert genotype data.Frederick Muriuki Muriithi
2024-01-10Cross-reference individuals to populations.Frederick Muriuki Muriithi
2024-01-10Insert any new individuals/samples into the database.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-05 04:15:35 +0000