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path: root/scripts/rqtl2
AgeCommit message (Expand)Author
2024-10-24Reduce number of local variables created in function.HEADmainFrederick Muriuki Muriithi
2024-10-24Add `jobid` to extraction directoryFrederick Muriuki Muriithi
2024-10-24Check pheno, phenose, and phenonum files with loggingFrederick Muriuki Muriithi
2024-10-24Check phenocovar files with loggingFrederick Muriuki Muriithi
2024-10-24Fix linting and typing errors.Frederick Muriuki Muriithi
2024-10-24Parse entire namespace object rather than individual values.Frederick Muriuki Muriithi
2024-10-24Move logger creation to `build_main` functionFrederick Muriuki Muriithi
2024-10-22Refactor `qc_pheno_file` and reuse it for different file types.Frederick Muriuki Muriithi
2024-10-22Check for errors in `pheno` files.Frederick Muriuki Muriithi
2024-10-21Check `phenocovar` files for errors.Frederick Muriuki Muriithi
2024-10-17Cleanup: Delete all extracted files after processing.Frederick Muriuki Muriithi
2024-10-17Leave TODO notes for what needs to be done.Frederick Muriuki Muriithi
2024-10-17Fetch samples from databaseFrederick Muriuki Muriithi
2024-10-17Undo transpose for any transposed filesFrederick Muriuki Muriithi
2024-10-17Pass new arguments to QC function.Frederick Muriuki Muriithi
2024-10-17Add `speciesid` and `populationid` arguments to the script.Frederick Muriuki Muriithi
2024-10-17Add the working directory argument to the script.Frederick Muriuki Muriithi
2024-10-17Extract the R/qtl2 bundle for processing.Frederick Muriuki Muriithi
2024-10-17Extract common functions.Frederick Muriuki Muriithi
2024-10-14Initialise background script for running QC on phenotype bundles.Frederick Muriuki Muriithi
2024-10-14BugFix: Use provided prefixFrederick Muriuki Muriithi
2024-10-14Make addition of arguments independent of each other.Frederick Muriuki Muriithi
2024-08-16Log out correct parameters.Frederick Muriuki Muriithi
2024-08-13Bug: cross reference with NULL cM when "gmap" file is absentFrederick Muriuki Muriithi
2024-08-08Fix bugs and pass in logger to functions.Frederick Muriuki Muriithi
2024-08-06Pass logger on to inner functionsFrederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
2024-07-05bug: Return a hashable key, not a dict.Frederick Muriuki Muriithi
2024-07-02Call correct method.Frederick Muriuki Muriithi
2024-07-02Ensure no duplicated values for the query.Frederick Muriuki Muriithi
2024-04-03Reduce size of data inserted per queryFrederick Muriuki Muriithi
2024-02-15Filter out NULL valuesFrederick Muriuki Muriithi
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-01-23Update scripts to use redis prefix.Frederick Muriuki Muriithi
2024-01-22scripts: Pass in logger to get detailed updates.Frederick Muriuki Muriithi
2024-01-19scripts: Process R/qtl2 bundleFrederick Muriuki Muriithi
2024-01-16Filter out items with values of `None`.Frederick Muriuki Muriithi
2024-01-15Update imports: `take` was moved to different package.Frederick Muriuki Muriithi
2024-01-15Process the `pheno` files.Frederick Muriuki Muriithi
2024-01-15Initialise `install_phenos` script.Frederick Muriuki Muriithi
2024-01-15Extract common structure into separate modules.Frederick Muriuki Muriithi
2024-01-11Update pmap data in the database.Frederick Muriuki Muriithi
2024-01-11Update gmap data in the databaseFrederick Muriuki Muriithi
2024-01-11Cleanup linting and typing errors.Frederick Muriuki Muriithi
2024-01-11CLI: Require datasetid as an argument.Frederick Muriuki Muriithi
2024-01-10Provide convenience functions to avoid subtle call errorsFrederick Muriuki Muriithi
2024-01-10Cross-reference genotype data to the dataset.Frederick Muriuki Muriithi
2024-01-10Insert genotype data.Frederick Muriuki Muriithi
2024-01-10Cross-reference individuals to populations.Frederick Muriuki Muriithi
2024-01-10Insert any new individuals/samples into the database.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 07:47:58 +0000