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gn-uploader: Data uploader for GeneNetwork
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phenotypes_bulk_edit.py
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95 min.
Convert PubMed_ID value from file to int
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Frederick Muriuki Muriithi
95 min.
Compute publications differences.
Frederick Muriuki Muriithi
98 min.
Save new publications retrieved from NCBI's PubMed database.
Frederick Muriuki Muriithi
4 hours
Retrieve publication information from NCBI.
Frederick Muriuki Muriithi
8 hours
Fix typo.
Frederick Muriuki Muriithi
8 hours
Check whether there are new PubMed IDs before beginning the fetch.
Frederick Muriuki Muriithi
2025-03-26
Pass PubMed IDs from the file to difference computation function.
Frederick Muriuki Muriithi
2025-03-26
Add function to compute publication differences.
Frederick Muriuki Muriithi
2025-03-26
Partial implementation: Fetch publications from NCBI.
Frederick Muriuki Muriithi
2025-03-26
Fetch existing publications from the database.
Frederick Muriuki Muriithi
2025-03-26
Compute differences in the descriptions.
Frederick Muriuki Muriithi
2025-03-26
Replaces empty strings with None
Frederick Muriuki Muriithi
2025-03-26
Collect IDs once at the top-level call to save on iterations.
Frederick Muriuki Muriithi
2025-03-26
Check whether the IDs are valid.
Frederick Muriuki Muriithi
2025-03-25
Add function to read the file and do basic data processing.
Frederick Muriuki Muriithi
2025-03-25
Initialise background script to handle bulk edits.
Frederick Muriuki Muriithi
