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gn-uploader: Data uploader for GeneNetwork
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2024-10-24
Add a `--loglevel` argument to select loglevel in scripts
Frederick Muriuki Muriithi
2024-10-24
Parse entire namespace object rather than individual values.
Frederick Muriuki Muriithi
2024-10-24
Move logger creation to `build_main` function
Frederick Muriuki Muriithi
2024-10-24
Add handler to send log messages to specific Redis list
Frederick Muriuki Muriithi
2024-10-24
Update Redis prefix settings.
Frederick Muriuki Muriithi
2024-10-24
Don't compute settings in configuration file.
Frederick Muriuki Muriithi
2024-10-23
Add documentation on background jobs.
Frederick Muriuki Muriithi
2024-10-22
Document emergent general QC structure for CSV files.
Frederick Muriuki Muriithi
2024-10-22
Refactor `qc_pheno_file` and reuse it for different file types.
Frederick Muriuki Muriithi
2024-10-22
Check for errors in `pheno` files.
Frederick Muriuki Muriithi
2024-10-21
Check `phenocovar` files for errors.
Frederick Muriuki Muriithi
2024-10-21
Add utilities for reading text files and csv files
Frederick Muriuki Muriithi
2024-10-17
UI: Create background job when user uploads file.
Frederick Muriuki Muriithi
2024-10-17
Cleanup: Delete all extracted files after processing.
Frederick Muriuki Muriithi
2024-10-17
Leave TODO notes for what needs to be done.
Frederick Muriuki Muriithi
2024-10-17
Fetch samples from database
Frederick Muriuki Muriithi
2024-10-17
Undo transpose for any transposed files
Frederick Muriuki Muriithi
2024-10-17
Pass new arguments to QC function.
Frederick Muriuki Muriithi
2024-10-17
Add `speciesid` and `populationid` arguments to the script.
Frederick Muriuki Muriithi
2024-10-17
Add the working directory argument to the script.
Frederick Muriuki Muriithi
2024-10-17
Extract the R/qtl2 bundle for processing.
Frederick Muriuki Muriithi
2024-10-17
Extract common functions.
Frederick Muriuki Muriithi
2024-10-17
Save errors for each file in lists. Parallelise error checking.
Frederick Muriuki Muriithi
2024-10-17
Rewrite the QC code for R/qtl2
Frederick Muriuki Muriithi
2024-10-17
Ignore comment lines.
Frederick Muriuki Muriithi
2024-10-17
Implement sha256 hashing over file contents.
Frederick Muriuki Muriithi
2024-10-17
Add test for function to compute file hash.
Frederick Muriuki Muriithi
2024-10-17
Rename test module.
Frederick Muriuki Muriithi
2024-10-17
mypy: Fix some typing issues.
Frederick Muriuki Muriithi
2024-10-14
Initialise background script for running QC on phenotype bundles.
Frederick Muriuki Muriithi
2024-10-14
Update typing information.
Frederick Muriuki Muriithi
2024-10-14
BugFix: Use provided prefix
Frederick Muriuki Muriithi
2024-10-14
Make addition of arguments independent of each other.
Frederick Muriuki Muriithi
2024-10-14
Improve error messages for R/qtl2 code.
Frederick Muriuki Muriithi
2024-10-14
Improve UI copy: Add list of files used.
Frederick Muriuki Muriithi
2024-10-14
Improve layout and styling of sidebar content
Frederick Muriuki Muriithi
2024-10-10
UI hints: Help user in choosing the appropriate option.
Frederick Muriuki Muriithi
2024-10-10
Build UI to add new phenotypes.
Frederick Muriuki Muriithi
2024-10-10
Limit the length of the population description
Frederick Muriuki Muriithi
2024-10-07
Handle "No linked resource" error cleanly.
Frederick Muriuki Muriithi
2024-10-07
Add phenotype units to UI
Frederick Muriuki Muriithi
2024-10-07
Reuse requests checks to fix "too many returns" linting error
Frederick Muriuki Muriithi
2024-10-07
linting: Fix minor linting issues.
Frederick Muriuki Muriithi
2024-10-07
Create new phenotype dataset (PublishFreeze).
Frederick Muriuki Muriithi
2024-10-07
Extract reusable input validation code.
Frederick Muriuki Muriithi
2024-10-07
Generalise pagination and paginate phenotypes
Frederick Muriuki Muriithi
2024-10-02
Add missing __init__.py
Frederick Muriuki Muriithi
2024-10-01
Add UI elements for possible extra functionality.
Frederick Muriuki Muriithi
2024-10-01
Extract privileges and use them for access control
Frederick Muriuki Muriithi
2024-09-30
BugFix: Ensure all data items show up.
Frederick Muriuki Muriithi
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