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gn-uploader: Data uploader for GeneNetwork
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Author
2025-04-14
Setup module-level loggers.
Frederick Muriuki Muriithi
2025-04-14
Compute data differences in the script.
Frederick Muriuki Muriithi
2025-04-14
Convert values to float where present.
Frederick Muriuki Muriithi
2025-04-14
Fix typo.
Frederick Muriuki Muriithi
2025-04-14
Move common fieldnames into exportable variable.
Frederick Muriuki Muriithi
2025-04-14
Implement difference computations.
Frederick Muriuki Muriithi
2025-04-14
Add tests for new difference computation function.
Frederick Muriuki Muriithi
2025-04-14
Convert PubMed ID to int.
Frederick Muriuki Muriithi
2025-04-14
Move test to appropriate package.
Frederick Muriuki Muriithi
2025-04-14
Move difference computation to `run()` function.
Frederick Muriuki Muriithi
2025-04-14
Update existing linked publication(s) rather than creating new.
Frederick Muriuki Muriithi
2025-04-14
Log out job command for easier debug.
Frederick Muriuki Muriithi
2025-04-14
Provide species, population and dataset identifiers as job metadata.
Frederick Muriuki Muriithi
2025-04-14
Compute new PubMed IDs.
Frederick Muriuki Muriithi
2025-04-14
Update imports.
Frederick Muriuki Muriithi
2025-04-14
Return created objects with their IDs
Frederick Muriuki Muriithi
2025-04-14
Add types for connection objects.
Frederick Muriuki Muriithi
2025-04-14
Compute differences with tested function.
Frederick Muriuki Muriithi
2025-04-14
Implement computation for publication differences.
Frederick Muriuki Muriithi
2025-04-14
Move code to save new publications to database.
Frederick Muriuki Muriithi
2025-04-14
Rename test module.
Frederick Muriuki Muriithi
2025-04-11
Fix bug: Provide empty defaults, and fix type.
Frederick Muriuki Muriithi
2025-04-11
Move code to fetch phenotype publications from DB to publications package.
Frederick Muriuki Muriithi
2025-04-11
Move code to fetch publications from pubmed to publications module.
Frederick Muriuki Muriithi
2025-04-11
Write test for computing differences for publications in bulk edits.
Frederick Muriuki Muriithi
2025-04-11
Setup client for use with tests.
Frederick Muriuki Muriithi
2025-04-11
Update application initialisation to allow config updates for tests.
Frederick Muriuki Muriithi
2025-04-09
Convert PubMed_ID value from file to int
Frederick Muriuki Muriithi
2025-04-09
Compute publications differences.
Frederick Muriuki Muriithi
2025-04-09
Save new publications retrieved from NCBI's PubMed database.
Frederick Muriuki Muriithi
2025-04-09
Retrieve publication information from NCBI.
Frederick Muriuki Muriithi
2025-04-09
Use class from Bootstrap5 for hiding elements.
Frederick Muriuki Muriithi
2025-04-09
Fix typo.
Frederick Muriuki Muriithi
2025-04-09
Check whether there are new PubMed IDs before beginning the fetch.
Frederick Muriuki Muriithi
2025-04-05
Don't clear anonymous sessions with every check for login.
Frederick Muriuki Muriithi
2025-04-05
Add base "alert" class for alerts for bootstrap 5.
Frederick Muriuki Muriithi
2025-04-05
Fix fetching of user details.
Frederick Muriuki Muriithi
Move the fetching of user details to the client module. Add checks to only fetch the details if they are not updated yet.
2025-04-05
Set "logged_in" key together with the token.
Frederick Muriuki Muriithi
2025-04-05
Override only the user details provided rather than the entire object.
Frederick Muriuki Muriithi
2025-03-26
Pass PubMed IDs from the file to difference computation function.
Frederick Muriuki Muriithi
2025-03-26
Add function to compute publication differences.
Frederick Muriuki Muriithi
2025-03-26
Partial implementation: Fetch publications from NCBI.
Frederick Muriuki Muriithi
2025-03-26
Fetch existing publications from the database.
Frederick Muriuki Muriithi
2025-03-26
Pass in system log-level to script.
Frederick Muriuki Muriithi
2025-03-26
Compute differences in the descriptions.
Frederick Muriuki Muriithi
2025-03-26
Replaces empty strings with None
Frederick Muriuki Muriithi
2025-03-26
Collect IDs once at the top-level call to save on iterations.
Frederick Muriuki Muriithi
2025-03-26
Provide connection URI for mariadb.
Frederick Muriuki Muriithi
2025-03-26
Update comment text.
Frederick Muriuki Muriithi
2025-03-26
Check whether the IDs are valid.
Frederick Muriuki Muriithi
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