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| author | Frederick Muriuki Muriithi | 2025-03-26 13:08:10 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2025-03-26 13:11:20 -0500 |
| commit | c35d84fbe327bae00361e2e09a56090aa2e3c72f (patch) | |
| tree | d1f5b5e8bebedaf75eb8118f081041c3ce17076f | |
| parent | c8efee1af29cef1b0471f898a0b0b7d5065ed7fc (diff) | |
| download | gn-uploader-c35d84fbe327bae00361e2e09a56090aa2e3c72f.tar.gz | |
Replaces empty strings with None
| -rw-r--r-- | scripts/phenotypes_bulk_edit.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py index 6e5d416..0ced2ab 100644 --- a/scripts/phenotypes_bulk_edit.py +++ b/scripts/phenotypes_bulk_edit.py @@ -106,7 +106,10 @@ def read_file(filepath: Path) -> Iterator[str]: count = count + 1 continue - _dict = dict(zip(headers, fields)) + _dict = dict(zip( + headers, + ((None if item.strip() == "" else item.strip()) + for item in fields))) _pheno, _xref = _dict.pop("UniqueIdentifier").split("::") _dict["phenotype_id"] = int(_pheno.split(":")[1]) _dict["xref_id"] = int(_xref.split(":")[1]) |