Compute new PubMed IDs.

1 files changed, 5 insertions, 1 deletions

diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py
index 30933a6..7de3347 100644
--- a/scripts/phenotypes_bulk_edit.py
+++ b/scripts/phenotypes_bulk_edit.py
@@ -105,7 +105,11 @@ def compute_differences(
     #    b. Publications differences
     db_publications = fetch_phenotype_publications(conn, pheno_xref_ids)
     new_publications = create_new_publications(
-        conn, pmed.fetch_publications(new_pubmed_ids))
+        conn, pmed.fetch_publications(tuple(
+            pubmed_id for pubmed_id in pubmed_ids
+            if pubmed_id not in
+            tuple(row["PubMed_ID"] for row in db_publications))))
+    logger.debug("New Publications: %s", new_publications)
     pub_diff = publications_differences(
         file_contents, db_publications, {
             row["PubMed_ID"]: row["PublicationId"]