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gn-uploader: Data uploader for GeneNetwork
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12 days
Add a `--loglevel` argument to select loglevel in scripts
Frederick Muriuki Muriithi
12 days
Parse entire namespace object rather than individual values.
Frederick Muriuki Muriithi
12 days
Move logger creation to `build_main` function
Frederick Muriuki Muriithi
12 days
Add handler to send log messages to specific Redis list
Frederick Muriuki Muriithi
12 days
Update Redis prefix settings.
Frederick Muriuki Muriithi
12 days
Don't compute settings in configuration file.
Frederick Muriuki Muriithi
13 days
Add documentation on background jobs.
Frederick Muriuki Muriithi
14 days
Document emergent general QC structure for CSV files.
Frederick Muriuki Muriithi
14 days
Refactor `qc_pheno_file` and reuse it for different file types.
Frederick Muriuki Muriithi
14 days
Check for errors in `pheno` files.
Frederick Muriuki Muriithi
2024-10-21
Check `phenocovar` files for errors.
Frederick Muriuki Muriithi
2024-10-21
Add utilities for reading text files and csv files
Frederick Muriuki Muriithi
2024-10-17
UI: Create background job when user uploads file.
Frederick Muriuki Muriithi
2024-10-17
Cleanup: Delete all extracted files after processing.
Frederick Muriuki Muriithi
2024-10-17
Leave TODO notes for what needs to be done.
Frederick Muriuki Muriithi
2024-10-17
Fetch samples from database
Frederick Muriuki Muriithi
2024-10-17
Undo transpose for any transposed files
Frederick Muriuki Muriithi
2024-10-17
Pass new arguments to QC function.
Frederick Muriuki Muriithi
2024-10-17
Add `speciesid` and `populationid` arguments to the script.
Frederick Muriuki Muriithi
2024-10-17
Add the working directory argument to the script.
Frederick Muriuki Muriithi
2024-10-17
Extract the R/qtl2 bundle for processing.
Frederick Muriuki Muriithi
2024-10-17
Extract common functions.
Frederick Muriuki Muriithi
2024-10-17
Save errors for each file in lists. Parallelise error checking.
Frederick Muriuki Muriithi
2024-10-17
Rewrite the QC code for R/qtl2
Frederick Muriuki Muriithi
2024-10-17
Ignore comment lines.
Frederick Muriuki Muriithi
2024-10-17
Implement sha256 hashing over file contents.
Frederick Muriuki Muriithi
2024-10-17
Add test for function to compute file hash.
Frederick Muriuki Muriithi
2024-10-17
Rename test module.
Frederick Muriuki Muriithi
2024-10-17
mypy: Fix some typing issues.
Frederick Muriuki Muriithi
2024-10-14
Initialise background script for running QC on phenotype bundles.
Frederick Muriuki Muriithi
2024-10-14
Update typing information.
Frederick Muriuki Muriithi
2024-10-14
BugFix: Use provided prefix
Frederick Muriuki Muriithi
2024-10-14
Make addition of arguments independent of each other.
Frederick Muriuki Muriithi
2024-10-14
Improve error messages for R/qtl2 code.
Frederick Muriuki Muriithi
2024-10-14
Improve UI copy: Add list of files used.
Frederick Muriuki Muriithi
2024-10-14
Improve layout and styling of sidebar content
Frederick Muriuki Muriithi
2024-10-10
UI hints: Help user in choosing the appropriate option.
Frederick Muriuki Muriithi
2024-10-10
Build UI to add new phenotypes.
Frederick Muriuki Muriithi
2024-10-10
Limit the length of the population description
Frederick Muriuki Muriithi
2024-10-07
Handle "No linked resource" error cleanly.
Frederick Muriuki Muriithi
2024-10-07
Add phenotype units to UI
Frederick Muriuki Muriithi
2024-10-07
Reuse requests checks to fix "too many returns" linting error
Frederick Muriuki Muriithi
2024-10-07
linting: Fix minor linting issues.
Frederick Muriuki Muriithi
2024-10-07
Create new phenotype dataset (PublishFreeze).
Frederick Muriuki Muriithi
2024-10-07
Extract reusable input validation code.
Frederick Muriuki Muriithi
2024-10-07
Generalise pagination and paginate phenotypes
Frederick Muriuki Muriithi
2024-10-02
Add missing __init__.py
Frederick Muriuki Muriithi
2024-10-01
Add UI elements for possible extra functionality.
Frederick Muriuki Muriithi
2024-10-01
Extract privileges and use them for access control
Frederick Muriuki Muriithi
2024-09-30
BugFix: Ensure all data items show up.
Frederick Muriuki Muriithi
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