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AgeCommit message (Expand)Author
2024-12-03Wrap everything in try-catch to handle errors gracefully.Frederick Muriuki Muriithi
2024-12-02Add emphasis to important point.Frederick Muriuki Muriithi
2024-12-02Fix typo.Frederick Muriuki Muriithi
2024-12-02Send logs to STDOUT too.Frederick Muriuki Muriithi
2024-12-02Launch job and redirect to job status page.Frederick Muriuki Muriithi
2024-12-02Add UI to view status of the job as it runs.Frederick Muriuki Muriithi
2024-12-02Return 0 on completion of QC processing.Frederick Muriuki Muriithi
2024-12-02Change from 'pending' to 'started' on entry to script.Frederick Muriuki Muriithi
2024-11-22Remove local code that does db connection.Frederick Muriuki Muriithi
2024-11-22Use gn-libs code for db connection.Frederick Muriuki Muriithi
2024-11-22Add gn-libs as a dependency.Frederick Muriuki Muriithi
2024-10-24Reduce number of local variables created in function.Frederick Muriuki Muriithi
2024-10-24Add `jobid` to extraction directoryFrederick Muriuki Muriithi
2024-10-24Check pheno, phenose, and phenonum files with loggingFrederick Muriuki Muriithi
2024-10-24Check phenocovar files with loggingFrederick Muriuki Muriithi
2024-10-24Fix linting and typing errors.Frederick Muriuki Muriithi
2024-10-24Add a `--loglevel` argument to select loglevel in scriptsFrederick Muriuki Muriithi
2024-10-24Parse entire namespace object rather than individual values.Frederick Muriuki Muriithi
2024-10-24Move logger creation to `build_main` functionFrederick Muriuki Muriithi
2024-10-24Add handler to send log messages to specific Redis listFrederick Muriuki Muriithi
2024-10-24Update Redis prefix settings.Frederick Muriuki Muriithi
2024-10-24Don't compute settings in configuration file.Frederick Muriuki Muriithi
2024-10-23Add documentation on background jobs.Frederick Muriuki Muriithi
2024-10-22Document emergent general QC structure for CSV files.Frederick Muriuki Muriithi
2024-10-22Refactor `qc_pheno_file` and reuse it for different file types.Frederick Muriuki Muriithi
2024-10-22Check for errors in `pheno` files.Frederick Muriuki Muriithi
2024-10-21Check `phenocovar` files for errors.Frederick Muriuki Muriithi
2024-10-21Add utilities for reading text files and csv filesFrederick Muriuki Muriithi
2024-10-17UI: Create background job when user uploads file.Frederick Muriuki Muriithi
2024-10-17Cleanup: Delete all extracted files after processing.Frederick Muriuki Muriithi
2024-10-17Leave TODO notes for what needs to be done.Frederick Muriuki Muriithi
2024-10-17Fetch samples from databaseFrederick Muriuki Muriithi
2024-10-17Undo transpose for any transposed filesFrederick Muriuki Muriithi
2024-10-17Pass new arguments to QC function.Frederick Muriuki Muriithi
2024-10-17Add `speciesid` and `populationid` arguments to the script.Frederick Muriuki Muriithi
2024-10-17Add the working directory argument to the script.Frederick Muriuki Muriithi
2024-10-17Extract the R/qtl2 bundle for processing.Frederick Muriuki Muriithi
2024-10-17Extract common functions.Frederick Muriuki Muriithi
2024-10-17Save errors for each file in lists. Parallelise error checking.Frederick Muriuki Muriithi
2024-10-17Rewrite the QC code for R/qtl2Frederick Muriuki Muriithi
2024-10-17Ignore comment lines.Frederick Muriuki Muriithi
2024-10-17Implement sha256 hashing over file contents.Frederick Muriuki Muriithi
2024-10-17Add test for function to compute file hash.Frederick Muriuki Muriithi
2024-10-17Rename test module.Frederick Muriuki Muriithi
2024-10-17mypy: Fix some typing issues.Frederick Muriuki Muriithi
2024-10-14Initialise background script for running QC on phenotype bundles.Frederick Muriuki Muriithi
2024-10-14Update typing information.Frederick Muriuki Muriithi
2024-10-14BugFix: Use provided prefixFrederick Muriuki Muriithi
2024-10-14Make addition of arguments independent of each other.Frederick Muriuki Muriithi
2024-10-14Improve error messages for R/qtl2 code.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-23 19:29:36 +0000