gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Expand)	Author
11 days	Reduce number of local variables created in function.HEAD main	Frederick Muriuki Muriithi
11 days	Add `jobid` to extraction directory	Frederick Muriuki Muriithi
11 days	Check pheno, phenose, and phenonum files with logging	Frederick Muriuki Muriithi
11 days	Check phenocovar files with logging	Frederick Muriuki Muriithi
11 days	Fix linting and typing errors.	Frederick Muriuki Muriithi
11 days	Add a `--loglevel` argument to select loglevel in scripts	Frederick Muriuki Muriithi
11 days	Parse entire namespace object rather than individual values.	Frederick Muriuki Muriithi
11 days	Move logger creation to `build_main` function	Frederick Muriuki Muriithi
11 days	Add handler to send log messages to specific Redis list	Frederick Muriuki Muriithi
11 days	Update Redis prefix settings.	Frederick Muriuki Muriithi
11 days	Don't compute settings in configuration file.	Frederick Muriuki Muriithi
12 days	Add documentation on background jobs.	Frederick Muriuki Muriithi
13 days	Document emergent general QC structure for CSV files.	Frederick Muriuki Muriithi
13 days	Refactor `qc_pheno_file` and reuse it for different file types.	Frederick Muriuki Muriithi
13 days	Check for errors in `pheno` files.	Frederick Muriuki Muriithi
2024-10-21	Check `phenocovar` files for errors.	Frederick Muriuki Muriithi
2024-10-21	Add utilities for reading text files and csv files	Frederick Muriuki Muriithi
2024-10-17	UI: Create background job when user uploads file.	Frederick Muriuki Muriithi
2024-10-17	Cleanup: Delete all extracted files after processing.	Frederick Muriuki Muriithi
2024-10-17	Leave TODO notes for what needs to be done.	Frederick Muriuki Muriithi
2024-10-17	Fetch samples from database	Frederick Muriuki Muriithi
2024-10-17	Undo transpose for any transposed files	Frederick Muriuki Muriithi
2024-10-17	Pass new arguments to QC function.	Frederick Muriuki Muriithi
2024-10-17	Add `speciesid` and `populationid` arguments to the script.	Frederick Muriuki Muriithi
2024-10-17	Add the working directory argument to the script.	Frederick Muriuki Muriithi
2024-10-17	Extract the R/qtl2 bundle for processing.	Frederick Muriuki Muriithi
2024-10-17	Extract common functions.	Frederick Muriuki Muriithi
2024-10-17	Save errors for each file in lists. Parallelise error checking.	Frederick Muriuki Muriithi
2024-10-17	Rewrite the QC code for R/qtl2	Frederick Muriuki Muriithi
2024-10-17	Ignore comment lines.	Frederick Muriuki Muriithi
2024-10-17	Implement sha256 hashing over file contents.	Frederick Muriuki Muriithi
2024-10-17	Add test for function to compute file hash.	Frederick Muriuki Muriithi
2024-10-17	Rename test module.	Frederick Muriuki Muriithi
2024-10-17	mypy: Fix some typing issues.	Frederick Muriuki Muriithi
2024-10-14	Initialise background script for running QC on phenotype bundles.	Frederick Muriuki Muriithi
2024-10-14	Update typing information.	Frederick Muriuki Muriithi
2024-10-14	BugFix: Use provided prefix	Frederick Muriuki Muriithi
2024-10-14	Make addition of arguments independent of each other.	Frederick Muriuki Muriithi
2024-10-14	Improve error messages for R/qtl2 code.	Frederick Muriuki Muriithi
2024-10-14	Improve UI copy: Add list of files used.	Frederick Muriuki Muriithi
2024-10-14	Improve layout and styling of sidebar content	Frederick Muriuki Muriithi
2024-10-10	UI hints: Help user in choosing the appropriate option.	Frederick Muriuki Muriithi
2024-10-10	Build UI to add new phenotypes.	Frederick Muriuki Muriithi
2024-10-10	Limit the length of the population description	Frederick Muriuki Muriithi
2024-10-07	Handle "No linked resource" error cleanly.	Frederick Muriuki Muriithi
2024-10-07	Add phenotype units to UI	Frederick Muriuki Muriithi
2024-10-07	Reuse requests checks to fix "too many returns" linting error	Frederick Muriuki Muriithi
2024-10-07	linting: Fix minor linting issues.	Frederick Muriuki Muriithi
2024-10-07	Create new phenotype dataset (PublishFreeze).	Frederick Muriuki Muriithi
2024-10-07	Extract reusable input validation code.	Frederick Muriuki Muriithi