| Age | Commit message (Expand) | Author |
|---|
| 13 days | Deactivate linter error check.HEADmain | Frederick Muriuki Muriithi |
| 13 days | Remove comments and demo statements. | Frederick Muriuki Muriithi |
| 13 days | Initialize pylint's rc file. | Frederick Muriuki Muriithi |
| 13 days | Leave cache's hash method uninitialized. | Frederick Muriuki Muriithi |
| 13 days | Handle case where authorisation is already set up. | Frederick Muriuki Muriithi |
| 13 days | Restore original names and instead ignore specific linter errors. | Frederick Muriuki Muriithi |
| 13 days | Fix linting issues. | Frederick Muriuki Muriithi |
| 13 days | Provide timeouts for requests calls. | Frederick Muriuki Muriithi |
| 13 days | Use `yield from …` form.•••Use the `yield from` form rather than iterating through the elements
of the built sequence.
| Frederick Muriuki Muriithi |
| 13 days | Remove unused script•••The bulk edit feature is no longer supported in the uploader.
| Frederick Muriuki Muriithi |
| 13 days | Fix imports•••Remove unused imports, update old imports to newer forms and add
missing imports.
| Frederick Muriuki Muriithi |
| 13 days | Refactor out common functionality into separate function. | Frederick Muriuki Muriithi |
| 13 days | Do not enter IDs in files in the description field. | Frederick Muriuki Muriithi |
| 14 days | Mark feature as not-implemented. | Frederick Muriuki Muriithi |
| 14 days | Fix tooltip text. | Frederick Muriuki Muriithi |
| 14 days | Allow adding new samples even where there are existing ones. | Frederick Muriuki Muriithi |
| 2025-07-08 | Fix entry/selection of population families.•••Populations can be grouped into families for presentation in the
menus. They can also be left ungrouped. These "families" are general
categories of data, whose only effect is to present the selection of
the populations from the menus in a more organised form.
The families can also differ from species to species, though there are
some very general categories that span multiple (all?) species.
This commit takes all the above into consideration, relaxing the entry
constraints and making entry of the families a lot more flexible.
| Frederick Muriuki Muriithi |
| 2025-07-02 | Compute the means while doing the cross-refences. | Frederick Muriuki Muriithi |
| 2025-07-02 | Update descriptions and abbreviations•••- Add the description to both the Original and Post-Publication
fields.
- Set the abbreviation fields to the identifier in the files.
| Frederick Muriuki Muriithi |
| 2025-07-02 | Allow upload of CSV or TSV files ending with the '.txt' extension. | Frederick Muriuki Muriithi |
| 2025-07-01 | Bugfix: The value needs to be a tuple or list. | Frederick Muriuki Muriithi |
| 2025-07-01 | Ignore any optional files that are not provided. | Frederick Muriuki Muriithi |
| 2025-07-01 | Remove misplaced UI elements: Publications are handled elsewhere. | Frederick Muriuki Muriithi |
| 2025-07-01 | Remove unused feature•••The feature is implemented elsewhere (GN2) in a better way.
| Frederick Muriuki Muriithi |
| 2025-07-01 | Enable scrolling and paging for both species and populations. | Frederick Muriuki Muriithi |
| 2025-07-01 | Fix publications UI. | Frederick Muriuki Muriithi |
| 2025-06-30 | Allow independent transposition of each file•••* Rework UI to provide independent selection of whether or not each
file is transposed
* Update the backend code to individually set the transposition status
for each file independently.
| Frederick Muriuki Muriithi |
| 2025-06-26 | Narrow search to only uploaded traits. | Frederick Muriuki Muriithi |
| 2025-06-26 | Add cross-reference IDs to job as metadata. | Frederick Muriuki Muriithi |
| 2025-06-26 | BugFix: Logical bug - files have already been "untransposed".•••The `read_csv_file_headers` function can read headings from
non-transposed or transposed file, depending on the value of a flag.
The bug was passing the value of the `*_transposed` flag from the
control file, even after any transposed files have been
"untransposed".
This commit passes an explicit `False` value, and adds a comment to
note the fix.
| Frederick Muriuki Muriithi |
| 2025-06-26 | Convert to tuple to allow indexing. | Frederick Muriuki Muriithi |
| 2025-06-26 | Replace first field header with standard "id" header. | Frederick Muriuki Muriithi |
| 2025-06-26 | Pass in the field separator, and comment char while reading file•••Pass in the field separator character to split the fields
correctly. Also pass in the comment character to safely ignore any
comment lines.
| Frederick Muriuki Muriithi |
| 2025-06-25 | Collapse the DataTables' viewport if there's less data. | Frederick Muriuki Muriithi |
| 2025-06-24 | Use positional parameters rather than named ones.•••Named parameters were causing problems on staging, where the names
would be converted into bytestrings and then used to index into the
dictionaries, leading to `KeyError` exceptions.
| Frederick Muriuki Muriithi |
| 2025-06-24 | Add notification for users that data is not saved yet. | Frederick Muriuki Muriithi |
| 2025-06-24 | Use pathlib.Path object for file paths. | Frederick Muriuki Muriithi |
| 2025-06-17 | Allow users to provide transposed files. | Frederick Muriuki Muriithi |
| 2025-06-17 | Fix documentation: The rows and columns were interchanged in docs. | Frederick Muriuki Muriithi |
| 2025-06-12 | Allow a publication to *NOT* have a PubMed ID. | Frederick Muriuki Muriithi |
| 2025-06-12 | Create a visual separation of fields. | Frederick Muriuki Muriithi |
| 2025-06-12 | Improve publication fetching for datatables. | Frederick Muriuki Muriithi |
| 2025-06-12 | Improve logger setup. | Frederick Muriuki Muriithi |
| 2025-06-11 | Limit returned results•••Limit the number of results returned to make page more
responsive. This is buggy at this point — it doesn't do exactly what I
expect, e.g. when I attempt to scroll, or use pagination, it doesn't
actually display all the pages as expected.
| Frederick Muriuki Muriithi |
| 2025-06-11 | Enable server-side searching. | Frederick Muriuki Muriithi |
| 2025-06-11 | Specify searchable columns. | Frederick Muriuki Muriithi |
| 2025-06-11 | Fix failing test. | Frederick Muriuki Muriithi |
| 2025-06-11 | Fix issues caught by linter. | Frederick Muriuki Muriithi |
| 2025-06-10 | Display the success page. | Frederick Muriuki Muriithi |
| 2025-06-10 | Bug: The Phenotype datasets need the InbredSet.Name as a prefix•••The Phenotype datasets need the InbredSet.Name, (not the
InbredSet.InbredSetCode) as a prefix for the data to be found and
listed in the GeneNetwork menu.
| Frederick Muriuki Muriithi |
