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-rw-r--r--guix.scm45
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+(use-modules (guix packages)
+ (guix git-download)
+ (gnu packages check)
+ (gnu packages databases)
+ (gnu packages python-xyz)
+ (gnu packages python-web)
+ (guix build-system python)
+ (gnu packages python-check)
+ ((guix licenses) #:prefix license:))
+
+(package
+ (name "genenetwork-qc")
+ (version "0.0.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://git.genenetwork.org/fredmanglis/gnqc_py.git")
+ (commit "3116206b9eca593323c7e25b200ebc76b9a59f6c")))
+ (sha256
+ (base32
+ "1q949yvj391b8kdr2a5143gfz1h4p5ig4l3cwcsahz5lq7p93ff0"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest")))))))
+ (native-inputs
+ (list python-mypy
+ python-pylint
+ python-pytest
+ python-hypothesis))
+ (propagated-inputs
+ (list python-rq
+ python-magic
+ python-flask
+ python-jsonpickle))
+ (synopsis "GeneNetwork Quality Control Application")
+ (description
+ "GeneNetwork qc is a quality control application for the data files that
+ eventually are used to add to the data in the GeneNetwork project.")
+ (home-page "https://git.genenetwork.org/fredmanglis/gnqc_py")
+ (license license:gpl3))