diff options
| -rw-r--r-- | .guix/modules/gnqc-py.scm | 57 | ||||
| l---------[-rw-r--r--] | guix.scm | 64 |
2 files changed, 58 insertions, 63 deletions
diff --git a/.guix/modules/gnqc-py.scm b/.guix/modules/gnqc-py.scm new file mode 100644 index 0000000..4ff86b5 --- /dev/null +++ b/.guix/modules/gnqc-py.scm @@ -0,0 +1,57 @@ +(define-module (gnqc-py) + #:use-module (guix) + #:use-module (guix gexp) + #:use-module (guix packages) + #:use-module (guix git-download) + #:use-module ((guix licenses) #:prefix license:) + + #:use-module (gnu packages check) + #:use-module (gnu packages databases) + #:use-module (gnu packages python-xyz) + #:use-module (gnu packages python-web) + #:use-module (guix build-system python) + #:use-module (gnu packages python-check)) + +(define %source-dir (dirname (dirname (current-source-directory)))) + +(define vcs-file? + (or (git-predicate %source-dir) + (const #t))) + +(define gnqc-py + (package + (name "gnqc-py") + (version "0.0.1") + (source (local-file "../.." + "gnqc-py-checkout" + #:recursive? #t + #:select? vcs-file?)) + (build-system python-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-k" "unit_test"))))))) + (native-inputs + (list python-mypy + python-pylint + python-pytest + python-hypothesis)) + (propagated-inputs + (list gunicorn + python-redis + python-flask + python-pyyaml + python-jsonpickle + python-mysqlclient)) + (synopsis "GeneNetwork Quality Control Application") + (description + "GeneNetwork qc is a quality control application for the data files that + eventually are used to add to the data in the GeneNetwork project.") + (home-page "https://gitlab.com/fredmanglis/gnqc_py") + (license license:agpl3+))) + +gnqc-py @@ -1,63 +1 @@ -(use-modules (git oid) - (guix gexp) - (git bindings) - (git reference) - (git repository) - (guix packages) - (guix git-download) - (gnu packages check) - (gnu packages databases) - (gnu packages python-xyz) - (gnu packages python-web) - (guix build-system python) - (gnu packages python-check) - ((guix licenses) #:prefix license:)) - -(define %source-dir (dirname (current-filename))) - -(libgit2-init!) -(define gnqc-py - (let ((commit (oid->string - (reference-target - (repository-head (repository-open %source-dir))))) - (revision "3")) - (package - (name "genenetwork-qc") - (version (git-version "0.0.1" revision commit)) - (source (local-file %source-dir - "gnqc_py-checkout" - #:recursive? #t - #:select? (git-predicate %source-dir))) - (build-system python-build-system) - (arguments - `(#:tests? #f ; Cannot start redis during `guix build' - #:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest"))))))) - (inputs - (list python-mypy - python-pylint - python-pytest - python-hypothesis)) - (propagated-inputs - (list redis - mariadb - gunicorn - python-redis - python-flask - python-pyyaml - python-jsonpickle - python-mysqlclient)) - (synopsis "GeneNetwork Quality Control Application") - (description - "GeneNetwork qc is a quality control application for the data files that - eventually are used to add to the data in the GeneNetwork project.") - (home-page "https://git.genenetwork.org/fredmanglis/gnqc_py") - (license license:agpl3+)))) - -(libgit2-shutdown!) - -gnqc-py +.guix/modules/gnqc-py.scm
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