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(define-module (gnqc-py)
#:use-module (guix)
#:use-module (guix gexp)
#:use-module (guix packages)
#:use-module (guix git-download)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages check)
#:use-module (gnu packages databases)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages python-web)
#:use-module (guix build-system python)
#:use-module (gnu packages python-check))
(define %source-dir (dirname (dirname (current-source-directory))))
(define vcs-file?
(or (git-predicate %source-dir)
(const #t)))
(define gnqc-py
(package
(name "gnqc-py")
(version "0.0.1")
(source (local-file "../.."
"gnqc-py-checkout"
#:recursive? #t
#:select? vcs-file?))
(build-system python-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest" "-k" "unit_test")))))))
(native-inputs
(list python-mypy
python-pylint
python-pytest
python-hypothesis))
(propagated-inputs
(list gunicorn
python-redis
python-flask
python-pyyaml
python-jsonpickle
python-mysqlclient))
(synopsis "GeneNetwork Quality Control Application")
(description
"GeneNetwork qc is a quality control application for the data files that
eventually are used to add to the data in the GeneNetwork project.")
(home-page "https://gitlab.com/fredmanglis/gnqc_py")
(license license:agpl3+)))
gnqc-py
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