diff options
| -rw-r--r-- | scripts/load_phenotypes_to_db.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py index cd46b01..9ad3a93 100644 --- a/scripts/load_phenotypes_to_db.py +++ b/scripts/load_phenotypes_to_db.py @@ -182,9 +182,9 @@ def cross_reference_phenotypes_publications_and_data( return tuple() -def update_auth(user, species, population, dataset, phenos): +def update_auth(token, species, population, dataset, phenos): """Grant the user access to their data.""" - pass + raise NotImplemented("Please implement this!") def load_data(conn: mysqldb.Connection, job: dict) -> int: @@ -261,8 +261,8 @@ def load_data(conn: mysqldb.Connection, job: dict) -> int: control_data=_control_data, filesdir=_outdir) # 6. If entirely new data, update authorisations (break this down) - update_auth(_user, _species, _population, _dataset, _phenos) logger.info("Updating authorisation.") + update_auth(_token, _species, _population, _dataset, _phenos) return 0 |