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| author | Frederick Muriuki Muriithi | 2025-06-02 12:37:39 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2025-06-02 12:37:39 -0500 |
| commit | 68e5c8a8206ce1ba16c281b89b9a57c2a88a6615 (patch) | |
| tree | 97e5c533f7675eccc59a9e03302a1608bc8e3b4a | |
| parent | 5f33d1046569ede201711f65970d658db8a148b8 (diff) | |
| download | gn-uploader-68e5c8a8206ce1ba16c281b89b9a57c2a88a6615.tar.gz | |
Update placeholder function
We'll probably provide a token to use to update the authorisation for
the new data.
The commit also explicitly raises a `NotImplement` exception for now.
| -rw-r--r-- | scripts/load_phenotypes_to_db.py | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py index cd46b01..9ad3a93 100644 --- a/scripts/load_phenotypes_to_db.py +++ b/scripts/load_phenotypes_to_db.py @@ -182,9 +182,9 @@ def cross_reference_phenotypes_publications_and_data( return tuple() -def update_auth(user, species, population, dataset, phenos): +def update_auth(token, species, population, dataset, phenos): """Grant the user access to their data.""" - pass + raise NotImplemented("Please implement this!") def load_data(conn: mysqldb.Connection, job: dict) -> int: @@ -261,8 +261,8 @@ def load_data(conn: mysqldb.Connection, job: dict) -> int: control_data=_control_data, filesdir=_outdir) # 6. If entirely new data, update authorisations (break this down) - update_auth(_user, _species, _population, _dataset, _phenos) logger.info("Updating authorisation.") + update_auth(_token, _species, _population, _dataset, _phenos) return 0 |