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-rw-r--r--.guix/modules/gnqc-py.scm57
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+(define-module (gnqc-py)
+ #:use-module (guix)
+ #:use-module (guix gexp)
+ #:use-module (guix packages)
+ #:use-module (guix git-download)
+ #:use-module ((guix licenses) #:prefix license:)
+
+ #:use-module (gnu packages check)
+ #:use-module (gnu packages databases)
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages python-web)
+ #:use-module (guix build-system python)
+ #:use-module (gnu packages python-check))
+
+(define %source-dir (dirname (dirname (current-source-directory))))
+
+(define vcs-file?
+ (or (git-predicate %source-dir)
+ (const #t)))
+
+(define gnqc-py
+ (package
+ (name "gnqc-py")
+ (version "0.0.1")
+ (source (local-file "../.."
+ "gnqc-py-checkout"
+ #:recursive? #t
+ #:select? vcs-file?))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest" "-k" "unit_test")))))))
+ (native-inputs
+ (list python-mypy
+ python-pylint
+ python-pytest
+ python-hypothesis))
+ (propagated-inputs
+ (list gunicorn
+ python-redis
+ python-flask
+ python-pyyaml
+ python-jsonpickle
+ python-mysqlclient))
+ (synopsis "GeneNetwork Quality Control Application")
+ (description
+ "GeneNetwork qc is a quality control application for the data files that
+ eventually are used to add to the data in the GeneNetwork project.")
+ (home-page "https://gitlab.com/fredmanglis/gnqc_py")
+ (license license:agpl3+)))
+
+gnqc-py