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| author | Frederick Muriuki Muriithi | 2025-06-10 17:01:16 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2025-06-10 17:19:44 -0500 |
| commit | 0cb2833d7210bd6e4ce492a3525ee74dc2057aac (patch) | |
| tree | 36e656ae7f039701c94f33cc8c74d1b9e302ca80 | |
| parent | 1c93d2597e16d9828760e10aeb056fa10fd4fcf9 (diff) | |
| download | gn-uploader-0cb2833d7210bd6e4ce492a3525ee74dc2057aac.tar.gz | |
Pass on the publication to the next job.
| -rw-r--r-- | scripts/load_phenotypes_to_db.py | 2 | ||||
| -rw-r--r-- | uploader/phenotypes/views.py | 1 |
2 files changed, 2 insertions, 1 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py index 8339ea9..8f49e10 100644 --- a/scripts/load_phenotypes_to_db.py +++ b/scripts/load_phenotypes_to_db.py @@ -358,7 +358,7 @@ def load_data(conn: mysqldb.Connection, job: dict) -> int: int(_job_metadata["dataset_id"])) # 1. Just retrive the publication: Don't create publications for now. _publication = fetch_publication_by_id( - conn, int(_job_metadata.get("publicationid", "0"))) or {"Id": 0} + conn, int(_job_metadata.get("publication_id", "0"))) or {"Id": 0} # 2. Save all new phenotypes: # -> return phenotype IDs bundle = Path(_job_metadata["bundle_file"]) diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 65d9371..82b46ff 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -709,6 +709,7 @@ def load_data_to_database( "population_id": population["Id"], "dataset_id": dataset["Id"], "bundle_file": _meta["bundle"], + "publication_id": _meta["publicationid"], "authserver": oauth2client.authserver_uri(), "token": token["access_token"], "success_handler": ( |